User: pshannon

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pshannon90
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Posts by pshannon

<prev • 15 results • page 2 of 2 • next >
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Answer: A: Problems with RefNet hanging
... Hi Mark, Thanks for this bug report.  I am glad to see the RefNet (and thus PSICQUIC) packages in use. I will figure out and fix the browser hang you see, which follows upon one of the PSICQUIC servers not responding.  Your report shows that happening for BioGrid, whose PSICQUIC server at http://t ...
written 4.8 years ago by pshannon90
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Answer: A: Rcytoscape Rstudio Error in xml.rpc(obj@uri, "Cytoscape.version") : Problems
... HI Alex, I suspect you are right:  some port blocked, perhaps. Here is a simple no-Cytoscape test which may be useful:   url <- "http://xmlrpc-c.sourceforge.net/api/sample.php" xml.rpc (url, 'sample.add', 1L, 1L) # [1] 2 - Paul   ...
written 4.8 years ago by pshannon90
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Answer: A: Rcytoscape Rstudio Error in xml.rpc(obj@uri, "Cytoscape.version") : Problems
... Hi Alex, Try this: library(RCytoscape) cw = new.CytoscapeWindow ("test", graph=RCytoscape::makeSimpleGraph ()) xml.rpc(cw@uri, "Cytoscape.test") # should display [1] "It works!" - Paul ...
written 4.8 years ago by pshannon90
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Answer: A: Rcytoscape Rstudio Error in xml.rpc(obj@uri, "Cytoscape.version") : Problems
... Hi Alex, Sorry you are still having trouble with RStudio/RCy.   In your original posting -- forgive me if you provided more information and I missed it --you say: > cw = new.CytoscapeWindow("vignette", graph=g, overwriteWindow=TRUE) Error in xml.rpc(obj@uri, "Cytoscape.version") : Problems C ...
written 4.8 years ago by pshannon90
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Answer: A: Rcytoscape Rstudio Error in xml.rpc(obj@uri, "Cytoscape.version") : Problems
... The "no method matching arguments: java.lang.String, java.lang.String" for a 1-node graph gives us the clue we need -- and points to my programming bug. In R, even a scalar is a list, but when translated to XML and then java, a scalar is a scalar. It appears therefore that I never tested a 1-node ...
written 4.8 years ago by pshannon90

Latest awards to pshannon

Popular Question 3.8 years ago, created a question with more than 1,000 views. For Shiny app for RefNet, PSICQUIC: annotated protein/protein interactions
Teacher 4.3 years ago, created an answer with at least 3 up-votes. For A: Mapping genome regions to gene symbols
Scholar 4.3 years ago, created an answer that has been accepted. For A: Mapping genome regions to gene symbols

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