User: hwillenbrock

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Posts by hwillenbrock

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Answer: A: DESeq2 paired multifactor test
... Hi Michael, One of my donor samples might be an outlier and I tried removing the samples from the analysis. This means that I now have the following samples:   tissue culture treatment culture.nested 1 tissueX 1 unstimulated 1 2 tissueX 1 stimulated ...
written 4.4 years ago by hwillenbrock0
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Answer: A: DESeq2 paired multifactor test
... Hi Michael, Thanks! That works, but won't this make the model assume that culture 1 and 6 are the same, as if the tissue samples where taken from the same person (which they are not)? ...
written 4.5 years ago by hwillenbrock0
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DESeq2 paired multifactor test
... Hi, I am wondering what the correct model formula and analysis approach is with DESeq2 for my multifactor paired design. I have tried to look at previous answers, e.g. https://support.bioconductor.org/p/62235/ and https://support.bioconductor.org/p/58553/ but I keep getting warnings from DESeq2, so ...
deseq2 paired written 4.5 years ago by hwillenbrock0

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Popular Question 4.4 years ago, created a question with more than 1,000 views. For DESeq2 paired multifactor test

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