## User: Mayte Suarez-Farinas

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300
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Last seen:
14 years, 6 months ago
Joined:
15 years, 8 months ago
Email:
m****@babel.rockefeller.edu

#### Posts by Mayte Suarez-Farinas

<prev • 30 results • page 2 of 3 • next >
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... I found the following issue using bioconductor annotation and I would like to hear some comment about it. The probeset 220184_at at hgu133a - affymetrix is annotated as Hs.479995 if I use the annotation package of BioConductor but if I go to netaffx(affymetrix-see details below) is annotated as H ...
written 15.2 years ago by Mayte Suarez-Farinas300 • updated 15.2 years ago by John Zhang2.9k
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... On Mon, 16 Aug 2004, James MacDonald wrote: > Mayte, > > You will not be able to use annaffy with the devel versions of the > annotation packages. There are often major structural changes made to > these packages that are incompatible with the existing versions of > annaffy (relea ...
written 15.3 years ago by Mayte Suarez-Farinas300
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... On Mon, 16 Aug 2004 bioconductor-request@stat.math.ethz.ch wrote: Thank you James and Wolfgang. I succeed with tkl/tk but I could'nt install annotation package (devel). It succesfully installed GO but stop in humann LLMAppings. Below follows the messages.. As a result, I cant not use annaffy becaus ...
written 15.3 years ago by Mayte Suarez-Farinas300
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... Hi everybody!!! I had to upgrade to R 2.0.0 to be able to run GO. I made a fresh install from subversion. I am running Redhat 9.0. The tcltk built thus aborts: stop("Tcl/Tk support is not available on this system") and so I have been unable to rebuild some Bioconductor packages which depend upo ...
written 15.3 years ago by Mayte Suarez-Farinas300 • updated 15.3 years ago by James Wettenhall1000
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... Hi I was trying to use packages GO and GOstats. Both of them include in their examples (see vignetes) the function "eapply". But it doesn't recognize the function and I couldn't find anything through help.search. Does anybody know what library contains this function ? I also try esApply, but it's o ...
written 15.4 years ago by Mayte Suarez-Farinas300 • updated 15.4 years ago by giuseppe scarsi10
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... Hi! I was using annafy function and I got anntable<-aafTableAnn(affyids,chip='hgu133a',anncols=aaf.handler()) and I got the error: Error in do.call("multiget", list(probeids, as.name(environment))) : couldn't find function "multiget" I think that the "multiget" function change to "mg ...
written 15.4 years ago by Mayte Suarez-Farinas300 • updated 15.4 years ago by Colin A. Smith220
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... A "simple" question: I built an annotation package using UNIGENE ids as key. Now I want to get the GB annotation for a list of genes. How can I do ? I use mget with env nameACCNUM but I obtained the UG again. Thanks -- Mayte Suarez Farinas The Rockefeller University 1230 York Avenue, Box 212 New ...
written 15.5 years ago by Mayte Suarez-Farinas300 • updated 15.5 years ago by Sean Davis21k
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... Hi Ian, I have been working with SDM database and I have to say that I found a lot of problems. marray package have a function called read.SMD that you can use and it skips the metainformation in the header. There is also a function read.SMD2 that somebody (sorry, I do not remember who) posted he ...
written 15.5 years ago by Mayte Suarez-Farinas300
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... Hi ! I got the following message while running AnnBPkgBuilder function. Couls somebody tell me what is going on ??? Warning message: cannot open: HTTP status was 404 Not Found' Error in loadFromUrl(srcUrl) : URL http://www.genome.ucsc.edu/goldenPath/hg17/da tabase/refLink.txt.gz is incorrect o ...
written 15.5 years ago by Mayte Suarez-Farinas300 • updated 15.5 years ago by John Zhang2.9k
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... Hi ! I got the following message while running AnnBPkgBuilder function. Couls somebody tell me what is going on ??? Warning message: cannot open: HTTP status was 404 Not Found' Error in loadFromUrl(srcUrl) : URL http://www.genome.ucsc.edu/goldenPath/hg17/da tabase/refLink.txt.gz is incorrect or ...
written 15.5 years ago by Mayte Suarez-Farinas300 • updated 15.4 years ago by Simon Kidd180

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