User: Mayte Suarez-Farinas

Reputation:
300
Status:
Trusted
Location:
Last seen:
14 years, 6 months ago
Joined:
15 years, 8 months ago
Email:
m****@babel.rockefeller.edu

Posts by Mayte Suarez-Farinas

<prev • 30 results • page 2 of 3 • next >
0
votes
1
answer
486
views
1
answer
annotation - 1 probe with 2 UG ??
... I found the following issue using bioconductor annotation and I would like to hear some comment about it. The probeset 220184_at at hgu133a - affymetrix is annotated as Hs.479995 if I use the annotation package of BioConductor but if I go to netaffx(affymetrix-see details below) is annotated as H ...
transcription annotation go hgu133a probe written 15.2 years ago by Mayte Suarez-Farinas300 • updated 15.2 years ago by John Zhang2.9k
0
votes
2
answers
593
views
2
answers
Answer: A: INstalling devel version
... On Mon, 16 Aug 2004, James MacDonald wrote: > Mayte, > > You will not be able to use annaffy with the devel versions of the > annotation packages. There are often major structural changes made to > these packages that are incompatible with the existing versions of > annaffy (relea ...
written 15.3 years ago by Mayte Suarez-Farinas300
0
votes
2
answers
593
views
2
answers
INstalling devel version
... On Mon, 16 Aug 2004 bioconductor-request@stat.math.ethz.ch wrote: Thank you James and Wolfgang. I succeed with tkl/tk but I could'nt install annotation package (devel). It succesfully installed GO but stop in humann LLMAppings. Below follows the messages.. As a result, I cant not use annaffy becaus ...
0
votes
1
answer
391
views
1
answer
Re: Bioconductor Digest, Vol 18, Issue 10
... Hi everybody!!! I had to upgrade to R 2.0.0 to be able to run GO. I made a fresh install from subversion. I am running Redhat 9.0. The tcltk built thus aborts: stop("Tcl/Tk support is not available on this system") and so I have been unable to rebuild some Bioconductor packages which depend upo ...
go affy written 15.3 years ago by Mayte Suarez-Farinas300 • updated 15.3 years ago by James Wettenhall1000
0
votes
2
answers
611
views
2
answers
(no subject)
... Hi I was trying to use packages GO and GOstats. Both of them include in their examples (see vignetes) the function "eapply". But it doesn't recognize the function and I couldn't find anything through help.search. Does anybody know what library contains this function ? I also try esApply, but it's o ...
go gostats written 15.4 years ago by Mayte Suarez-Farinas300 • updated 15.4 years ago by giuseppe scarsi10
0
votes
1
answer
495
views
1
answer
error in annaffy (multiget)
... Hi! I was using annafy function and I got anntable<-aafTableAnn(affyids,chip='hgu133a',anncols=aaf.handler()) and I got the error: Error in do.call("multiget", list(probeids, as.name(environment))) : couldn't find function "multiget" I think that the "multiget" function change to "mg ...
annaffy written 15.4 years ago by Mayte Suarez-Farinas300 • updated 15.4 years ago by Colin A. Smith220
0
votes
1
answer
422
views
1
answer
GB from a package built with ABPkgBuilder
... A "simple" question: I built an annotation package using UNIGENE ids as key. Now I want to get the GB annotation for a list of genes. How can I do ? I use mget with env nameACCNUM but I obtained the UG again. Thanks -- Mayte Suarez Farinas The Rockefeller University 1230 York Avenue, Box 212 New ...
annotation written 15.5 years ago by Mayte Suarez-Farinas300 • updated 15.5 years ago by Sean Davis21k
0
votes
0
answers
691
views
0
answers
loading SMD...
... Hi Ian, I have been working with SDM database and I have to say that I found a lot of problems. marray package have a function called read.SMD that you can use and it skips the metainformation in the header. There is also a function read.SMD2 that somebody (sorry, I do not remember who) posted he ...
cancer breast organism probe category written 15.5 years ago by Mayte Suarez-Farinas300
0
votes
1
answer
438
views
1
answer
AnnBuilder error ....
... Hi ! I got the following message while running AnnBPkgBuilder function. Couls somebody tell me what is going on ??? Warning message: cannot open: HTTP status was `404 Not Found' Error in loadFromUrl(srcUrl) : URL http://www.genome.ucsc.edu/goldenPath/hg17/da tabase/refLink.txt.gz is incorrect o ...
written 15.5 years ago by Mayte Suarez-Farinas300 • updated 15.5 years ago by John Zhang2.9k
0
votes
3
answers
608
views
3
answers
(no subject)
... Hi ! I got the following message while running AnnBPkgBuilder function. Couls somebody tell me what is going on ??? Warning message: cannot open: HTTP status was `404 Not Found' Error in loadFromUrl(srcUrl) : URL http://www.genome.ucsc.edu/goldenPath/hg17/da tabase/refLink.txt.gz is incorrect or ...
written 15.5 years ago by Mayte Suarez-Farinas300 • updated 15.4 years ago by Simon Kidd180

Latest awards to Mayte Suarez-Farinas

No awards yet. Soon to come :-)

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 16.09
Traffic: 280 users visited in the last hour