User: bicycle1885

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Comment: C: Incorrect row names when a VCF has multiple ALTs.
... I see, this problem is reproducible to you. I'll email the developer of this package. Thanks. ...
written 5.1 years ago by bicycle18850
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Comment: C: Incorrect row names when a VCF has multiple ALTs.
... Thank you for your reply. I confirmed this happened again and pasted links to the R script and input file for reproduction. https://dl.dropboxusercontent.com/u/25281592/bug.R https://dl.dropboxusercontent.com/u/25281592/ex2.vcf MD5 hash values are: ~/D/Public $ md5 bug.R ex2.vcf MD5 (bug.R) = 9 ...
written 5.1 years ago by bicycle18850
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Incorrect row names when a VCF has multiple ALTs.
... When a VCF object has multiple ALTs for a single VCF record, the expanded VCF object seems simply duplicate row names and consequently the row names don't match genetic variations. The following code reproduces this problem (the input file is pasted at the bottom of this post): > library(Varia ...
variantannotation vcf written 5.1 years ago by bicycle18850 • updated 5.1 years ago by Valerie Obenchain6.7k

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Popular Question 5.1 years ago, created a question with more than 1,000 views. For Incorrect row names when a VCF has multiple ALTs.

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