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Showing :
answers
2
votes
1
reply
1.8k
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Answer:
Answer: Problem converting transcript to genomic coordinates with Annotation Hub
2.3 years ago
Johannes Rainer
★ 2.0k
2
votes
1
reply
2.7k
views
Answer:
Answer: ensembldb support for Ensembl's transcript_name column
2.4 years ago
Johannes Rainer
★ 2.0k
0
votes
1
reply
2.7k
views
Answer:
Answer: ensembldb support for Ensembl's transcript_name column
2.4 years ago
Johannes Rainer
★ 2.0k
0
votes
2
replies
1.8k
views
Answer:
Answer: How to filter EnsDb into another EnsDb object instead of GRange?
2.8 years ago
Johannes Rainer
★ 2.0k
2
votes
0
replies
1.3k
views
Answer:
Answer: Retrieve gene description with ensembldb
3.0 years ago
Johannes Rainer
★ 2.0k
2
votes
1
reply
2.4k
views
Answer:
Answer: Mapping Ensemble IDs with version numbers using ensembl annotation packages
3.1 years ago
Johannes Rainer
★ 2.0k
1
vote
0
replies
743
views
Answer:
A: Is transcript color accessible through ensembldb? (gold = in both HAVANA+ENSEMBL
3.7 years ago
Johannes Rainer
★ 2.0k
2
votes
1
reply
791
views
Answer:
A: How to get MS spectrum from features extracted with findChromPeaks ?
3.8 years ago
Johannes Rainer
★ 2.0k
2
votes
1
reply
725
views
Answer:
C: readMSData and netCDF files, only TIC intensity available
3.8 years ago
Johannes Rainer
★ 2.0k
4
votes
2
replies
2.0k
views
Answer:
A: readMSData and netCDF files, how to set polarity ?
3.8 years ago
Johannes Rainer
★ 2.0k
0
votes
1
reply
1.4k
views
Answer:
A: Merging and Aligning LC-MS/MS Data With XCMS (multiple scan ranges/polarities)
3.9 years ago
Johannes Rainer
★ 2.0k
1
vote
1
reply
2.4k
views
Answer:
C: Is org.Mm.eg.db updated to mus musculus version 99?
3.9 years ago
Johannes Rainer
★ 2.0k
1
vote
0
replies
817
views
Answer:
C: protein_domain_source from ensembldb and mapping with PFAM.db
3.9 years ago
Johannes Rainer
★ 2.0k
0
votes
2
replies
1.5k
views
Answer:
A: xcms centwave roiList error
4.7 years ago
Johannes Rainer
★ 2.0k
1
vote
1
reply
1.1k
views
Answer:
A: Extracting Data from MSn experiment data ("OnDiskMSnExp")
4.7 years ago
Johannes Rainer
★ 2.0k
1
vote
0
replies
995
views
Answer:
A: Gene biotype for a given symbol
4.8 years ago
Johannes Rainer
★ 2.0k
2
votes
1
reply
1.7k
views
Answer:
A: How to use EnsDb in annotatePeak from package "ChIPseeker"
5.1 years ago
Johannes Rainer
★ 2.0k
3
votes
1
reply
2.6k
views
Answer:
A: Retrieve canonical transcript for each gene via ensembldb R package
5.2 years ago
Johannes Rainer
★ 2.0k
0
votes
0
replies
963
views
Answer:
A: Pick coding vs non-coding from Ensembl data set
5.3 years ago
Johannes Rainer
★ 2.0k
2
votes
2
replies
5.1k
views
Answer:
A: Ensembl plants at annotationHub?
5.4 years ago
Johannes Rainer
★ 2.0k
7
votes
2
replies
34k
views
Answer:
A: How to map all Ensembl IDs to Gene Symbols- Problem with AnootationDbi
updated 5.4 years ago by
Martin Morgan
25k • written 7.5 years ago by
Johannes Rainer
★ 2.0k
0
votes
1
reply
4.2k
views
Answer:
A: Create Ensembl transcript to gene IDs table with R ensembldb package for tximpor
5.9 years ago
Johannes Rainer
★ 2.0k
0
votes
0
replies
1.4k
views
Answer:
A: Metabolite identification package
5.9 years ago
Johannes Rainer
★ 2.0k
2
votes
2
replies
2.8k
views
Answer:
A: ensembldb error/bug: Can't locate Bio/EnsEMBL/ApiVersion.pm in @INC | fetchTable
6.0 years ago
Johannes Rainer
★ 2.0k
1
vote
1
reply
1.2k
views
Answer:
A: Using massifquant for peak detection of generic matrix data?
6.1 years ago
Johannes Rainer
★ 2.0k
1
vote
1
reply
3.1k
views
Answer:
A: ensembldb from M.musculus NCBI37 v67 gtf
6.2 years ago
Johannes Rainer
★ 2.0k
1
vote
0
replies
3.1k
views
Answer:
A: ensembldb from M.musculus NCBI37 v67 gtf
6.2 years ago
Johannes Rainer
★ 2.0k
1
vote
0
replies
1.3k
views
Answer:
A: ensembldb and pseudogenes mapping to the same Ensembl ID
6.2 years ago
Johannes Rainer
★ 2.0k
4
votes
1
reply
3.7k
views
Answer:
A: Is it possible to annotated mitochondrial genes with ENSEMBL ids and Homo.sapien
6.4 years ago
Johannes Rainer
★ 2.0k
1
vote
1
reply
2.9k
views
Answer:
A: ReadMSData problem with xcms
6.4 years ago
Johannes Rainer
★ 2.0k
0
votes
0
replies
1.2k
views
Answer:
A: get_gene_transcript_exon_tables.pl extremely slow
6.4 years ago
Johannes Rainer
★ 2.0k
1
vote
1
reply
2.2k
views
Answer:
A: XCMS obiwarp adjustRtime issue
6.4 years ago
Johannes Rainer
★ 2.0k
2
votes
2
replies
3.8k
views
Answer:
A: How to create tx2gene data.frame when there's no TxDb object for the organism yo
6.5 years ago
Johannes Rainer
★ 2.0k
1
vote
1
reply
3.0k
views
Answer:
A: ensDbFromGtf error from gtf file downloaded from GENCODE.
6.5 years ago
Johannes Rainer
★ 2.0k
2
votes
0
replies
2.0k
views
Answer:
A: org.Hs.eg.db error same ensembl ID in different genes
6.6 years ago
Johannes Rainer
★ 2.0k
2
votes
1
reply
4.2k
views
Answer:
A: EnsemblDb: how to retrieve gene name / description?
6.6 years ago
Johannes Rainer
★ 2.0k
0
votes
1
reply
1.8k
views
Answer:
A: errors with makeTxDbFromBiomart
6.7 years ago
Johannes Rainer
★ 2.0k
3
votes
0
replies
1.7k
views
Answer:
A: Is it possible to get Ensembl gene descriptions with ensembldb?
6.8 years ago
Johannes Rainer
★ 2.0k
1
vote
1
reply
2.3k
views
Answer:
A: ensembldb salmon deseq2 txt2import right tool?
6.8 years ago
Johannes Rainer
★ 2.0k
1
vote
2
replies
3.6k
views
Answer:
A: biomaRt - Error in getBM: The query to the BioMart webservice returned an invali
6.8 years ago
Johannes Rainer
★ 2.0k
2
votes
0
replies
1.7k
views
Answer:
A: Is it possible to get Ensembl gene descriptions with ensembldb?
6.8 years ago
Johannes Rainer
★ 2.0k
2
votes
1
reply
2.4k
views
Answer:
A: Is mapId supposed to concatenate multiVals?
6.8 years ago
Johannes Rainer
★ 2.0k
0
votes
0
replies
2.0k
views
Answer:
A: keys() fails on EnsDb.Hsapiens.v75 on Bioc 3.5
6.9 years ago
Johannes Rainer
★ 2.0k
1
vote
2
replies
2.0k
views
Answer:
A: keys() fails on EnsDb.Hsapiens.v75 on Bioc 3.5
6.9 years ago
Johannes Rainer
★ 2.0k
0
votes
0
replies
1.5k
views
Answer:
A: New to mass spec data analysis
7.0 years ago
Johannes Rainer
★ 2.0k
4
votes
1
reply
2.0k
views
Answer:
A: Problem running dexseq in parallel using BiocParallel
7.0 years ago
Johannes Rainer
★ 2.0k
0
votes
1
reply
3.0k
views
Answer:
A: Getting errors with makeTxDbFromBiomart
7.2 years ago
Johannes Rainer
★ 2.0k
1
vote
1
reply
1.3k
views
Answer:
A: Programatically download correct genome wide annotation package for given organi
7.2 years ago
Johannes Rainer
★ 2.0k
0
votes
1
reply
2.6k
views
Answer:
A: Gviz: AlignmentsTrack from a bam file with non-UCSC chromosome names
7.2 years ago
Johannes Rainer
★ 2.0k
1
vote
0
replies
1.2k
views
Answer:
A: xcms warning message
7.3 years ago
Johannes Rainer
★ 2.0k
93 results • Page
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