User: Peter

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Peter0
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Posts by Peter

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Comment: C: Should I calculate normalization factors in edgeR using all libraries or using o
... OK, thanks for the clarification. The normalization factors are indeed very similar in the two cases. ...
written 4.4 years ago by Peter0
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Should I calculate normalization factors in edgeR using all libraries or using only the compared libraries?
... I have 3 groups: untreated, negative control (mock treatment), and treated; with 3 replicates in each. I am looking for differential expression between the groups, most importantly the negative control -- treated. Which is a better approach: - calculating the normalization factors using all 9 libra ...
edger calcnormfactors rna-seq written 4.4 years ago by Peter0 • updated 4.4 years ago by Aaron Lun23k

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