User: amonida

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amonida20
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Location:
United Kingdom
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5 months ago
Joined:
4 years, 11 months ago
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Posts by amonida

<prev • 18 results • page 2 of 2 • next >
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News: Ensembl GRCh37 release 82 - second data update
... Dear all, We are pleased to announce that the second Ensembl data update for human GRCh37 (e82) has been released on http://grch37.ensembl.org/index.html. Ensembl Genes 82 Renamed filters and attributes from variation to variant Renamed the "Transcript length" attribute to "Transcript leng ...
biomart news ensembl grch37 written 4.1 years ago by amonida20
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Answer: A: biomaRt fails for M.musculus annotation, Ensembl version 80
... Hi Sarah, Sorry that you're having problems with Ensembl data. As it happens, it seems that a redirection was not fully in place. The problem should now have been fixed already. Again, sorry for the inconvenience. Best regards, Amonida -- Amonida Zadissa Ensembl Production Team EMBL-EBI Hinxton ...
written 4.2 years ago by amonida20
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Comment: C: Getting a list of all tRNA encoding genes for an organism?
... Hi Johannes, Your assumption is correct; we don't annotate tRNAs at genes in Ensembl They are stored in the simple_feature table in the Core MySQL database. As Hans pointed out earlier, they can be accessed via our API. Hope this helps. Cheers, Amonida -- Amonida Zadissa Ensembl Production On 01 ...
written 4.6 years ago by amonida20
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Comment: C: Ensembl 79 release is out!
... Thanks for that Dan! Cheers, Amonida On 14/03/2015 00:53, Dan Tenenbaum [bioc] wrote: > Activity on a post you are following on support.bioconductor.org > <https: support.bioconductor.org=""> > > User Dan Tenenbaum <https: support.bioconductor.org="" u="" 4256=""/> wrote &g ...
written 4.7 years ago by amonida20
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Comment: C: Ensembl 79 release is out!
... Hi Herve, Sure, I'll keep that in mind for next time. Cheers, Amonida On 13/03/2015 16:45, Hervé Pagès [bioc] wrote: > Activity on a post you are following on support.bioconductor.org > <https: support.bioconductor.org=""> > > User Hervé Pagès <https: support.bioconductor.org ...
written 4.7 years ago by amonida20
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News: Ensembl 79 release is out!
... Ensembl e79 is now out with the following Biomart changes: * Ensembl Genes 79     Split up the id list and id list limit filters to separate external references from probes filters         Renamed "Limit to genes..." to "Limit to genes (external references)..." and "Limit to genes (microarray prob ...
biomart news ensembl release written 4.7 years ago by amonida20 • updated 4.7 years ago by Dan Tenenbaum8.2k
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Comment: C: [biomaRt] getBM: Error when obtaining mim_morbid_description
... Hi Tibor and Julian, This is the format of the data that has supplied to us. We are in contact with OMIM about this issue. Unfortunately though it is too late to address this in the upcoming e79 release, due next week, but hopefully we'll fix it in e80. Sorry for the inconvenience. Cheers, Amonid ...
written 4.7 years ago by amonida20
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News: Ensembl 78 release is out!
... Dear all, Enembl e78 is out and along with it the following Biomart changes: * Ensembl Genes 78         Updated mouse assembly to GRCm38.p3         Added "Transcript length" in the Features, Structures and Sequences pages of the attribute section         Removed DN/DS attributes for species that d ...
biomart news ensembl written 5.0 years ago by amonida20

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