User: rachelwright8

gravatar for rachelwright8
Reputation:
10
Status:
New User
Location:
United States
Last seen:
4 years, 1 month ago
Joined:
4 years, 6 months ago
Email:
r************@gmail.com

Posts by rachelwright8

<prev • 5 results • page 1 of 1 • next >
0
votes
4
answers
3.0k
views
4
answers
Answer: A: arrayQualityMetrics with DESeq2
... Thanks for your comments.  I'll keep an eye out for updates, but I appreciate all of your help developing a solution in the meantime.   ...
written 4.4 years ago by rachelwright810
1
vote
4
answers
3.0k
views
4
answers
Answer: A: arrayQualityMetrics with DESeq2
... Thanks, Michael!  Though I still had an object class error: #Dr. Love's way e=ExpressionSet(assay(vsd), AnnotatedDataFrame(colData(vsd)), AnnotatedDataFrame(rowData(vsd))) #Error in (function (classes, fdef, mtable)  :  #            unable to find an inherited method for function ‘AnnotatedDataFra ...
written 4.4 years ago by rachelwright810
4
votes
4
answers
3.0k
views
4
answers
arrayQualityMetrics with DESeq2
... Hi experts, Does anyone have advice on how to use arrayQualityMetrics to identify sample outliers with DESeq data sets produced using DESeq2?  I'm having trouble generating a file that the "arrayQualityMetrics" function will accept using DESeq2 functions ("DESeq" or "varianceStabilizingTransformati ...
arrayqualitymetrics deseq2 sample outliers written 4.4 years ago by rachelwright810
0
votes
1
answer
1.2k
views
1
answers
Comment: C: DESeq2: interaction controlling for genetic effects
... Wald it is.  Thanks, Michael! ...
written 4.5 years ago by rachelwright810
0
votes
1
answer
1.2k
views
1
answer
DESeq2: interaction controlling for genetic effects
... Hi all, I'm reanalyzing a gene expression data set with DESeq2 that I had already analyzed in DESeq and have some questions about how which models would be most appropriate.  My sample data is below.  I have a virus treatment (virus "V" or control "C) and a heat treatment (heat "H" or ambient "A"). ...
deseq interactions written 4.5 years ago by rachelwright810 • updated 4.5 years ago by Michael Love23k

Latest awards to rachelwright8

Popular Question 4.2 years ago, created a question with more than 1,000 views. For arrayQualityMetrics with DESeq2

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 16.09
Traffic: 335 users visited in the last hour