User: amoltej

gravatar for amoltej
amoltej10
Reputation:
10
Status:
New User
Location:
Australia
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Google Scholar Page
Last seen:
2 years, 1 month ago
Joined:
4 years, 10 months ago
Email:
a******@gmail.com

Posts by amoltej

<prev • 22 results • page 2 of 3 • next >
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Input file of NGS data for Pathview
... Hi,  I have RNA seq data for different tissues of non-model insect. I want to visualize the pathway connection between these two tissues. for that I am planning to use pathview. But there is no clear cut example of input data set. I have already mapped my transcripts with drosophilla KEGG database. ...
rnaseq pathview data visualization written 4.0 years ago by amoltej10 • updated 4.0 years ago by Luo Weijun1.5k
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Comment: C: confusing output from EdgeR Glm
... fantastic !!! Thanks Aaron!  ...
written 4.1 years ago by amoltej10
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Comment: C: confusing output from EdgeR Glm
... Sorry the data doesn't make sense there - here is updated version of sample data  Raw_data             Bcyt Bcyt Bcyt Gut Gut Gut G000241 1580 1726 1805 94 82 244 G000270 34849 34345 36117 50908 44 ...
written 4.1 years ago by amoltej10
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confusing output from EdgeR Glm
... Hi,  I am using following code to analyse two samples and differentially expressed gene in them. there are 3 replicates for each sample. after completing analysis I am seeing all the logFC values in negative, I don't know why? I actually went back and checked the raw count for them and they seem wr ...
edger logfc pvalue written 4.1 years ago by amoltej10 • updated 4.1 years ago by Aaron Lun25k
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Comment: C: edgeR output error and data frame setting
... Thanks Gordon for replying, I wanted to test GLM model for the data thats why I wanted to that!    ...
written 4.1 years ago by amoltej10
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Comment: C: edgeR output error and data frame setting
... Hi Aaron I have another que. What will happen if I setup design without intercept? ...
written 4.2 years ago by amoltej10
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Comment: C: edgeR output error and data frame setting
... Thank you Aaron! Amol ...
written 4.2 years ago by amoltej10
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edgeR output error and data frame setting
... Hi,  I have two questions about EdgeR pipeline. I am dealing with no replicate situation and have two conditions to check the differential expression. I am trying to apply GLM model for the analysis. I am bit confused about the design.  I am running following commands to setup design -  design & ...
edger data.frame glmlrt written 4.2 years ago by amoltej10 • updated 4.1 years ago by Gordon Smyth38k
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Answer: A: rsubread featurecounts returns 0% successfully assigned reads
... Hi, I am facing same problem. can you please guide me on that problem? Thanks ...
written 4.2 years ago by amoltej10
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Comment: C: featureCount - very less Successfully assigned reads
... Thanks Aaron for directing me!  But does this really matters because background is same, process is same. and you are understanding why it is happening. whether it is C version or R version how would it be different?    ...
written 4.8 years ago by amoltej10

Latest awards to amoltej

Great Question 2.5 years ago, created a question with more than 5,000 views. For featureCount - very less Successfully assigned reads
Popular Question 4.0 years ago, created a question with more than 1,000 views. For featureCount - very less Successfully assigned reads

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