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14
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9
replies
3.7k
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Is Limma's removeBatchEffect() and log2() commutative?
limma rna-seq removebatcheffect()
updated 6.3 years ago by ▴ 130 • written 8.0 years ago by ▴ 80
12
votes
2
replies
3.5k
views
How does edgeR compare to lme4?
rna-seq edger mixed model random effects lme4
updated 7.8 years ago by 50k • written 7.8 years ago by ▴ 80
0
votes
1
reply
2.1k
views
EdgeR: Each treatment as a group versus treatment effects over all times?
edgeR limma
updated 8.2 years ago by ★ 28k • written 8.2 years ago by ▴ 80
2
votes
1
reply
1.1k
views
Does order of removeBatchEffect() and DE subsetting matter for clustered heat map visualization?
rna-seq edgeR limma removebatcheffect() batch
updated 8.2 years ago by ★ 28k • written 8.2 years ago by ▴ 80
0
votes
1
reply
1.1k
views
Comment: C: EdgeR: is more than one control per batch an issue?
8.2 years ago Ekarl2 ▴ 80
4
votes
3
replies
1.1k
views
EdgeR: is more than one control per batch an issue?
edgeR batch effect
updated 8.2 years ago by ★ 28k • written 8.2 years ago by ▴ 80
0
votes
1
reply
1.7k
views
Comment: C: Is this design matrix correct (treament factor with three levels)?
8.2 years ago Ekarl2 ▴ 80
4
votes
4
replies
1.7k
views
Is this design matrix correct (treament factor with three levels)?
edger limma design matrix
8.2 years ago Ekarl2 ▴ 80
0
votes
0
replies
1.7k
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Comment: C: Is this design matrix correct (treament factor with three levels)?
8.2 years ago Ekarl2 ▴ 80
0
votes
1
reply
13k
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Comment: C: Is the following a correct usage of Limma's removeBatchEffect() for clustered he
8.3 years ago Ekarl2 ▴ 80
0
votes
1
reply
13k
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Comment: C: Is the following a correct usage of Limma's removeBatchEffect() for clustered he
8.3 years ago Ekarl2 ▴ 80
9
votes
10
replies
13k
views
Is the following a correct usage of Limma's removeBatchEffect() for clustered heat map generation?
limma removeBatchEffect heatmap clustering
updated 8.3 years ago by ▴ 610 • written 8.3 years ago by ▴ 80
0
votes
1
reply
2.2k
views
EdgeR: setting reference condition and design matrix headers
edgeR reference design matrix multiple factor design
updated 8.9 years ago by ★ 28k • written 8.9 years ago by ▴ 80
0
votes
1
reply
7.2k
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Comment: C: EdgeR: glmLRT(), Multifactorial designs and correction for multiple testing
9.3 years ago Ekarl2 ▴ 80
0
votes
1
reply
7.2k
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Comment: C: EdgeR: glmLRT(), Multifactorial designs and correction for multiple testing
9.3 years ago Ekarl2 ▴ 80
0
votes
1
reply
7.2k
views
Comment: C: EdgeR: glmLRT(), Multifactorial designs and correction for multiple testing
9.3 years ago Ekarl2 ▴ 80
6
votes
7
replies
7.2k
views
EdgeR: glmLRT(), Multifactorial designs and correction for multiple testing
edgeR glmLRT() multiple factor design multiple testing correction
updated 9.3 years ago by ★ 28k • written 9.3 years ago by ▴ 80
2
votes
1
reply
3.3k
views
RNA-seq: Batch-free expression values
edgeR limma removeBatchEffect()
updated 9.3 years ago by ★ 28k • written 9.3 years ago by ▴ 80
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