User: pavitrarc

gravatar for pavitrarc
pavitrarc20
Reputation:
20
Status:
New User
Location:
United States/Seattle/Fred Hutch
Twitter:
@pavitrarc
Scholar ID:
Google Scholar Page
Last seen:
2 months, 1 week ago
Joined:
2 years, 10 months ago
Email:
p******************@gmail.com

Postdoc at UW/FredHutch. Bioinformatics, math models, viruses, evolution. 

Posts by pavitrarc

<prev • 18 results • page 1 of 2 • next >
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Comment: C: CRISPRseek with Doench 2016 scores
... Thanks for the quick reply, Julie. I haven't compared them both against our data just yet but it would be great to have the option since the authors claim it's an improvement over the previous algorithm. ...
written 4 months ago by pavitrarc20
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CRISPRseek with Doench 2016 scores
... Hi,  Does anyone know if there's a way to run CRISPRseek with the gRNA efficacy scores computed using the updated Doench method?   Thanks! ...
crisprseek written 4 months ago by pavitrarc20 • updated 4 months ago by Julie Zhu3.8k
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Add flowclust gate to gatingset
... How do I add a flowclust 2d gate to an existing gatingset? I am able to do this successfully for rectangle gates using add(gs,myrectgate,...) but I can't figure out how to do a similar thing with a flowclust gate.  ...
flowclust opencyto written 5 months ago by pavitrarc20 • updated 5 months ago by Jiang, Mike1.0k
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Comment: C: queryLoc2refLoc not implemented?
... Ha, thanks. I was just editing my question to ask if it was going to be in an update in the near future.  ...
written 19 months ago by pavitrarc20
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queryLoc2refLoc not implemented?
... When I try to use the queryLoc2refLoc() function I get the error message "NOT IMPLEMENTED YET, SORRY!". Am I missing something or is this not yet available?  ...
genomicalignments written 19 months ago by pavitrarc20 • updated 19 months ago by Steve Lianoglou12k
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Comment: C: IRanges/ShortRead causing crash?
... Thanks Martin! ...
written 24 months ago by pavitrarc20
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Comment: C: IRanges/ShortRead causing crash?
... Sorry! Realized I should have done that right after I hit post. It looks like sread() first fails. Then running vmatchPattern() to look for a segment within rfa causes my session to crash.  Example: rm(list=ls()); source("http://bioconductor.org/biocLite.R"); biocLite(ask=FALSE); library('Short ...
written 24 months ago by pavitrarc20
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IRanges/ShortRead causing crash?
... Has there been a recent update to IRanges and/or ShortRead? A script which was working fine before is now causing my R session to crash with a segfault error. The crash happens when I try to use sread() and vmatchPattern().  ...
biostrings iranges shortread written 24 months ago by pavitrarc20 • updated 24 months ago by Martin Morgan ♦♦ 20k
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Comment: C: openCyto fails to load
... Thanks Mike! ...
written 2.1 years ago by pavitrarc20
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openCyto fails to load
... Hi,  I'm getting an error when trying to load openCyto. It was working fine before but now I'm getting the following error message: > library(openCyto); Error : objects ‘dfltCounts’, ‘drvkde’ are not exported by 'namespace:ks' Error: package or namespace load failed for ‘openCyto’   I tried ...
opencyto bioclite written 2.1 years ago by pavitrarc20 • updated 2.1 years ago by yang.chen0

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