User: pavitrarc

gravatar for pavitrarc
pavitrarc20
Reputation:
20
Status:
New User
Location:
United States/Seattle/Fred Hutch
Twitter:
@pavitrarc
Scholar ID:
Google Scholar Page
Last seen:
1 year, 2 months ago
Joined:
3 years, 10 months ago
Email:
p******************@gmail.com

Postdoc at UW/FredHutch. Bioinformatics, math models, viruses, evolution. 

Posts by pavitrarc

<prev • 18 results • page 1 of 2 • next >
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Comment: C: CRISPRseek with Doench 2016 scores
... Thanks for the quick reply, Julie. I haven't compared them both against our data just yet but it would be great to have the option since the authors claim it's an improvement over the previous algorithm. ...
written 16 months ago by pavitrarc20
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CRISPRseek with Doench 2016 scores
... Hi,  Does anyone know if there's a way to run CRISPRseek with the gRNA efficacy scores computed using the updated Doench method?   Thanks! ...
crisprseek written 16 months ago by pavitrarc20 • updated 16 months ago by Julie Zhu3.8k
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Add flowclust gate to gatingset
... How do I add a flowclust 2d gate to an existing gatingset? I am able to do this successfully for rectangle gates using add(gs,myrectgate,...) but I can't figure out how to do a similar thing with a flowclust gate.  ...
flowclust opencyto written 17 months ago by pavitrarc20 • updated 17 months ago by Jiang, Mike1.2k
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Comment: C: queryLoc2refLoc not implemented?
... Ha, thanks. I was just editing my question to ask if it was going to be in an update in the near future.  ...
written 2.6 years ago by pavitrarc20
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queryLoc2refLoc not implemented?
... When I try to use the queryLoc2refLoc() function I get the error message "NOT IMPLEMENTED YET, SORRY!". Am I missing something or is this not yet available?  ...
genomicalignments written 2.6 years ago by pavitrarc20 • updated 2.6 years ago by Steve Lianoglou12k
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Comment: C: IRanges/ShortRead causing crash?
... Thanks Martin! ...
written 3.0 years ago by pavitrarc20
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Comment: C: IRanges/ShortRead causing crash?
... Sorry! Realized I should have done that right after I hit post. It looks like sread() first fails. Then running vmatchPattern() to look for a segment within rfa causes my session to crash.  Example: rm(list=ls()); source("http://bioconductor.org/biocLite.R"); biocLite(ask=FALSE); library('Short ...
written 3.0 years ago by pavitrarc20
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IRanges/ShortRead causing crash?
... Has there been a recent update to IRanges and/or ShortRead? A script which was working fine before is now causing my R session to crash with a segfault error. The crash happens when I try to use sread() and vmatchPattern().  ...
biostrings iranges shortread written 3.0 years ago by pavitrarc20 • updated 3.0 years ago by Martin Morgan ♦♦ 22k
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Comment: C: openCyto fails to load
... Thanks Mike! ...
written 3.1 years ago by pavitrarc20
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openCyto fails to load
... Hi,  I'm getting an error when trying to load openCyto. It was working fine before but now I'm getting the following error message: > library(openCyto); Error : objects ‘dfltCounts’, ‘drvkde’ are not exported by 'namespace:ks' Error: package or namespace load failed for ‘openCyto’   I tried ...
opencyto bioclite written 3.1 years ago by pavitrarc20 • updated 3.1 years ago by yang.chen0

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