User: petyuk

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petyuk60
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Posts by petyuk

<prev • 13 results • page 2 of 2 • next >
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hyperGTest for MSigDB categories
... Can anyone help with a (proper) way of testing for MSigDB categories enrichment using hypergeometric test? I am looking something along the lines like we do testing for GO/KEGG/PFAM categories first by creating an instance of HyperGParams subclass (e.g. GOHyperGParams or KEGGHyperGParams) and then ...
gostats category msigdb hypergeometric test written 2.3 years ago by petyuk60
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Answer: A: package specifically dedicated to a manuscript
... Thanks for suggesting an experiment type of package.  The ones I have looked at before contained no R code - just data. Examples of experimental packages with code Hiiragi2013 and HD2013SGI are right on target.  This is what I was looking for. My guess is that the original intent of experimental pa ...
written 2.8 years ago by petyuk60
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package specifically dedicated to a manuscript
... I am performing an analysis of targeted proteomics for a study with rather sophisticated study design.  As a result of this and other issues (like novelty of the data itself) I found myself writing a lot of custom code  (such as visualization, normalization, etc.).  The code just begs to organize it ...
package guidelines written 2.8 years ago by petyuk60

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Student 2.8 years ago, asked a question with at least 3 up-votes. For package specifically dedicated to a manuscript

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