User: zx8754

gravatar for zx8754
zx875410
Reputation:
10
Status:
New User
Location:
United Kingdom
Last seen:
11 months, 3 weeks ago
Joined:
4 years, 5 months ago
Email:
z*****@gmail.com

Posts by zx8754

<prev • 9 results • page 1 of 1 • next >
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Comment: C: Compute average score across multiple bed files
... https://www.biostars.org/p/329080/ ...
written 11 months ago by zx875410
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Strange first_time object in rtracklayer import
... I am struggling to reproduce, hoping developers would have an insight to this behaviour. I am using rtracklayer::import() to subset bigWig data. Something like: x <- import(files[i], which = gr) After running above, as expected there is a GRanges x object and unexpected first_time object with ...
rtracklayer bigwig import written 2.7 years ago by zx875410 • updated 2.7 years ago by Michael Lawrence11k
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Comment: C: Install ggbio development version
... By the way below gives '404 Not Found' error: source("http://www.tengfei.name/projects/ggbio/utils/installer.R") ...
written 2.7 years ago by zx875410
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Comment: C: Install ggbio development version
... Did you manage to install devel version of ggbio? If yes, could you please share your system set up? R version, OS, any other relevant detail? Oh, re-reading your answer, Michael's changes didn't take place yet in "devel world", and need to wait a bit? ...
written 2.7 years ago by zx875410
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Comment: C: Install ggbio development version
... I am on R.3.3.1, re-installed "BiocInstaller", then tried "useDevel(TRUE)", but it is saying I need "more recent R". Then tried latest R for Windows (R Under development (unstable) (2016-10-18 r71535)), and tried to re-install "BiocInstaller", but it failed. Could you tell with which R version the " ...
written 2.7 years ago by zx875410
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Comment: C: Install ggbio development version
... See edits, thank you. ...
written 2.7 years ago by zx875410
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Install ggbio development version
... I need to install development version of bioconductor package - ggbio.  @lawremi suggested to install development version (1.23.1) to resolve X-axis zoom issues here. From the installation manuals, it says, I need to install r-devel. Then biocLite() will install development version automatically. ...
ggbio package installation development written 2.7 years ago by zx875410 • updated 2.7 years ago by Martin Morgan ♦♦ 23k
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Comment: C: Linkage disequilibrium with 1000 Genomes/HapMap
... Any R package that works "live" on 1000G data on the web without downloading? ...
written 3.9 years ago by zx875410
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Comment: C: writeVcf no longer writes records for ungenotyped data
... I am using "VariantAnnotation_1.12.9", I am reading in VCF using readVcf, then writing out using writeVcf, and no-call genotypes get converted to ref, ie.: "./." becomes "0/0", is this normal? ...
written 4.5 years ago by zx875410

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Supporter 15 months ago, voted at least 25 times.

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