User: chwhite
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Posts by chwhite
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... Will do. One last thing. I noticed that when I use ~0+Treatment+Patient, it contains all of the Treatments but it is missing the first patient. Since I'm not using the subtraction design, do I need all Patients in this. A work around I played with was to add in a 0 level when generating the Pati ...
written 4.8 years ago by
chwhite • 0
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... Thanks, and answered above. I had read the blocking effect but was unsure how to insert the Condition information into the design. If I separated the two conditions, then I would use the following.
design(~Patient+Treatment)
I was also confused on how to set this up as in section 3.3.1 without t ...
written 4.9 years ago by
chwhite • 0
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... Thanks for the information.
I am interested in comparing the effect of the treatment (D vs. S, D vs. R, S vs. R) in both inf and uninf conditions. I am also interested in the differences between the inf and uninf conditions under the effect of all 3 treatments.
The reasons it is a paired design ...
written 4.9 years ago by
chwhite • 0
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... I have the following experimental design and wanted to check the construction of the design matrix as well as a few other questions about setting it up.
Patient<-c("P1","P1","P1","P2","P2","P2","P3","P3","P3","P4","P4","P4","P1","P1","P1","P2","P2","P2","P3","P3","P3","P4","P4","P4")
Condition ...
written 4.9 years ago by
chwhite • 0
• updated
4.9 years ago by
Gordon Smyth ♦ 39k
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... Thanks for the info. I will look into it.
...
written 4.9 years ago by
chwhite • 0
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... I am confused by something in the edgeR user guide in section 3.3.1. The worked example indicates that each sample is obtained from independent subjects but the Sample name in the sample column seems to indicate that the Drug and Placebo samples are paired (i.e. Sample1, Sample2, etc.).
Is this e ...
written 4.9 years ago by
chwhite • 0
• updated
4.9 years ago by
Gordon Smyth ♦ 39k
Latest awards to chwhite
Popular Question
4.8 years ago,
created a question with more than 1,000 views.
For EdgeR User Guide. Analysis with multiple factors. Section 3.3.1
Popular Question
4.8 years ago,
created a question with more than 1,000 views.
For EdgeR. Analysis with pairing across condition and treatment. Design Matrix
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