Marcel Ramos ♦♦ 90
Reputation:
90
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Trusted
Location:
United States
Last seen:
2 days ago
Joined:
3 years ago
Email:
m***********@roswellpark.org

Posts by Marcel Ramos

<prev • 25 results • page 2 of 3 • next >
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... Update: Please see the latest package submission (RaggedExperiment) for this type of data. https://github.com/Bioconductor/Contributions/issues/339 and the GitHub version of the package https://github.com/Bioconductor/RaggedExperiment/    Sincerely,  Marcel ...
written 10 months ago by Marcel Ramos ♦♦ 90
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... Hi Rob,  I would really discourage the use of View for anything other than a matrix or data.frame.  The class should have a good enough show method so that you wouldn't need to use View.    Regards, Marcel  ...
written 10 months ago by Marcel Ramos ♦♦ 90
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... Hi niutster,  A couple of points:  If you are using Bioconductor, the recommended way to install a github package is BiocInstaller::biocLite("raivokolde/seqlm").  Since this package is not part of Bioconductor, we can't provide support with any issues that may arise from it.    I tried to ins ...
written 12 months ago by Marcel Ramos ♦♦ 90
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... Hi,  There are several ways you can check and format your code as suggested in BiocCheck. These include: goodpractice::gp (checker function - MangoTheCat/goodpractice github repository) lintr (checker package) formatR (text formatting package) RStudio settings (best used when writing)   You ...
written 15 months ago by Marcel Ramos ♦♦ 90
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... Hi,  Generally, the maintainer is reponsive on GitHub. He should also respond here. You can create an issue at github.com/guangchuangyu/clusterprofiler/issues just to make sure he is aware.    Regards,  Marcel  ...
written 15 months ago by Marcel Ramos ♦♦ 90
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... Hi,  Generally, the maintainer is reponsive on GitHub. He should also respond here. You can create an issue at github.com/guangchuangyu/clusterprofiler/issues just to make sure he is aware.    Regards,  Marcel  ...
written 15 months ago by Marcel Ramos ♦♦ 90
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... Hi Fakhrul,  Note: In the future please provide any error messages in English.  It seems to be an issue with the mapping of your network drive. The message says that UNC paths are not supported. Please map the network drive to something that is recognizable by R (i.e., "E:\path\to\folder\" ). You ...
written 15 months ago by Marcel Ramos ♦♦ 90
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... Hi clausdkuhn,  Please see ?Biostrings::matchPWM for more details.    Regards, Marcel  ...
written 15 months ago by Marcel Ramos ♦♦ 90
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... It looks like you're registered. This shouldn't be an error. Have you updated your BiocCheck?  https://support.bioconductor.org/api/email/david.a.quigley%40gmail.com/   ...
written 16 months ago by Marcel Ramos ♦♦ 90
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... Hi Sean! We have the MultiAssayExperiment::RangedRaggedAssay class that can handle all of the above. It would require you to have a GRangesList object with a "score" metadata column denoting copy_number. The GRangesList can be created from a DataFrame using the `GenomicRanges::makeGRangesL ...
written 18 months ago by Marcel Ramos ♦♦ 90

Latest awards to Marcel Ramos

Scholar 10 months ago, created an answer that has been accepted. For A: Classes and methods for working with segmented copy number data
Scholar 10 months ago, created an answer that has been accepted. For A: Classes and methods for working with segmented copy number data

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