Admin: Marcel Ramos

gravatar for Marcel Ramos
Marcel Ramos ♦♦ 140
Reputation:
140
Status:
Trusted
Location:
United States
Last seen:
6 days, 1 hour ago
Joined:
3 years, 4 months ago
Email:
m***********@roswellpark.org

Posts by Marcel Ramos

<prev • 30 results • page 2 of 3 • next >
0
votes
1
answers
283
views
1
answers
Comment: C: GenomicRanges_RaggedExperiment Error in as background, class mcol no method or d
... Hi Taran,  Thank you for your report. I wasn't able to get to it yesterday. I will have a look at it today.  Regards, Marcel ...
written 7 months ago by Marcel Ramos ♦♦ 140
0
votes
0
answers
169
views
0
answers
Comment: C: Calulation of ka/ks (dn/ds) using sliding windows
... Hi Emilio, It is always more helpful to provide a reproducible example snippet of the code and data you currently have and a text representation of the result that you want to achieve. This way those who view your question are more likely to provide a response.  I would also discourage the use of ...
written 7 months ago by Marcel Ramos ♦♦ 140
0
votes
0
answers
147
views
0
answers
[RCircos] Examples flagged as not run
... Dear Henry, I've tried to run the examples under the RCircos.Reset.Core.Components {RCircos} page. There are a couple of typos in the examples (in asterisks below): rows <- which(ideo$BandColor=="red"**)** RCircos.Reset.Plot.Param**e**ters(params) Could you also please remove the ## Not ru ...
bug rcircos written 9 months ago by Marcel Ramos ♦♦ 140
0
votes
2
answers
446
views
2
answers
Answer: A: converting a GRangesList object with different lengths into a data frame
... Hi Assa Yeroslaviz, If you collapse into a single data.frame, each row will represent a different genomic location. You may not want this. Nevertheless, if you do want to go ahead and do this, you can try this: # Take all the score values scoreList <- lapply(tiles.list, function(x) mcols(x)) # I ...
written 9 months ago by Marcel Ramos ♦♦ 140
0
votes
2
answers
433
views
2
answers
Comment: C: Classes and methods for working with segmented copy number data
... Update: RaggedExperiment is now in Bioconductor devel! ...
written 14 months ago by Marcel Ramos ♦♦ 140
0
votes
2
answers
433
views
2
answers
Answer: A: Classes and methods for working with segmented copy number data
... Update: Please see the latest package submission (RaggedExperiment) for this type of data. https://github.com/Bioconductor/Contributions/issues/339 and the GitHub version of the package https://github.com/Bioconductor/RaggedExperiment/    Sincerely,  Marcel ...
written 14 months ago by Marcel Ramos ♦♦ 140
0
votes
1
answers
247
views
1
answers
Answer: A: Sorting the VIEW index in ascending/descending order
... Hi Rob,  I would really discourage the use of View for anything other than a matrix or data.frame.  The class should have a good enough show method so that you wouldn't need to use View.    Regards, Marcel  ...
written 14 months ago by Marcel Ramos ♦♦ 140
0
votes
1
answers
406
views
1
answers
Answer: A: seqlm installation error
... Hi niutster,  A couple of points:  If you are using Bioconductor, the recommended way to install a github package is `BiocInstaller::biocLite("raivokolde/seqlm")`.  Since this package is not part of Bioconductor, we can't provide support with any issues that may arise from it.    I tried to ins ...
written 16 months ago by Marcel Ramos ♦♦ 140
0
votes
1
answers
315
views
1
answers
Answer: A: code format for Bioconductor submission
... Hi,  There are several ways you can check and format your code as suggested in BiocCheck. These include: goodpractice::gp (checker function - MangoTheCat/goodpractice github repository) lintr (checker package) formatR (text formatting package) RStudio settings (best used when writing)   You ...
written 19 months ago by Marcel Ramos ♦♦ 140
0
votes
3
answers
817
views
3
answers
Comment: C: Issue of clusterprofiler package
... Hi,  Generally, the maintainer is reponsive on GitHub. He should also respond here. You can create an issue at github.com/guangchuangyu/clusterprofiler/issues just to make sure he is aware.    Regards,  Marcel  ...
written 19 months ago by Marcel Ramos ♦♦ 140

Latest awards to Marcel Ramos

Scholar 12 months ago, created an answer that has been accepted. For A: Classes and methods for working with segmented copy number data
Scholar 14 months ago, created an answer that has been accepted. For A: Classes and methods for working with segmented copy number data
Scholar 14 months ago, created an answer that has been accepted. For A: Classes and methods for working with segmented copy number data

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.2.0
Traffic: 304 users visited in the last hour