Admin: Marcel Ramos

gravatar for Marcel Ramos
Marcel Ramos ♦♦ 410
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2 months ago
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4 years, 7 months ago
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Posts by Marcel Ramos

<prev • 52 results • page 2 of 6 • next >
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Comment: C: MultiAssayExperiment: Error in dimnames(x) <- dn : length of 'dimnames' [2] not
... Hi Mario, Are you sure you have the latest version? It just re-ran it and it works for me. > sessionInfo() R version 3.5.1 Patched (2018-09-23 r75356) Platform: x86_64-pc-linux-gnu (64-bit) Running under: Ubuntu 18.04.1 LTS Matrix products: default BLAS: /usr/lib/x86_64-linux-gnu/blas/libblas.s ...
written 11 months ago by Marcel Ramos ♦♦ 410
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Answer: A: MultiAssayExperiment: Error in dimnames(x) <- dn : length of 'dimnames' [2] not
... Ciao Mario, Thanks for reporting this. This should be fixed in MultiAssayExperiment version 1.7.21. Best regards, Marcel ...
written 11 months ago by Marcel Ramos ♦♦ 410
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Comment: C: MultiAssayExperiment:combine two multiassayexperiment object
...     Prego!      ...
written 12 months ago by Marcel Ramos ♦♦ 410
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Answer: A: MultiAssayExperiment:combine two multiassayexperiment object
... Hi Mario, Thank you for posting this enhancement request. I have added it to MultiAssayExperiment 1.7.19 (devel). The stipulation is that experiment names must be unique across MultiAssayExperiment objects. Best regards, Marcel ...
written 12 months ago by Marcel Ramos ♦♦ 410
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Comment: C: MultiAssayExperiment:combine two multiassayexperiment object
... I get the idea but one requirement would be to keep experiment names unique across `MultiAssayExperiment` objects. I am coming up with a patch to allow this. Thanks, MR ...
written 12 months ago by Marcel Ramos ♦♦ 410
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Answer: A: MultiAssayExperiment: how can i change name of a experiment in a multiassayexper
... Hi all, Apologies for the delay but you can now use names<- to replace the names of experiments in a MultiAssayExperiment. library(MultiAssayExperiment) example(MultiAssayExperiment) names(mae) <- c("AffyTwo", "Methyl450", "RNA", "GISTICv2") mae Please ensure that you have version >= 1.7. ...
written 12 months ago by Marcel Ramos ♦♦ 410
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Comment: C: Simplifying a RaggedExperiment using qreduceAssay and weighted means.
... Hey all, How does this commit look? https://github.com/Bioconductor/RaggedExperiment/commit/9fdcfbf0779d3508af7ae0afc288f946758b60d6 Thanks, Marcel ...
written 14 months ago by Marcel Ramos ♦♦ 410
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Comment: C: TCGAutils: Error in .checkBarcodes(barcodes) : barcode delimiters not consistent
... Hi Mario, I've checked this with the Bioconductor release version 3.7 and it works as well. There may be something wrong with your installation. Check that you're not mixing versions of packages. Remove a couple of packages: remove.packages(c("BiocManager", "BiocVersion")). Your biocLite("BiocUp ...
written 14 months ago by Marcel Ramos ♦♦ 410
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Answer: A: TCGAutils: Error in .checkBarcodes(barcodes) : barcode delimiters not consistent
... Hi Mario, Can you please include your sessionInfo() ? This works for me with Bioc-devel 3.8. library(curatedTCGAData) library(TCGAutils) coad <- curatedTCGAData("COAD", "CN*", FALSE) sampleTables(coad) > sampleTables(coad) $`COAD_CNASeq-20160128` 01 10 11 68 55 13 $`COAD_CNASNP-201601 ...
written 14 months ago by Marcel Ramos ♦♦ 410
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Comment: C: Querying specific TCGA datasets through the MultiAssayExperiment R package
... 2) Yes, `curatedTCGAData` returns a `MultiAssayExperiment` data object. ...
written 14 months ago by Marcel Ramos ♦♦ 410

Latest awards to Marcel Ramos

Scholar 8 months ago, created an answer that has been accepted. For A: Classes and methods for working with segmented copy number data
Scholar 8 months ago, created an answer that has been accepted. For A: Classes and methods for working with segmented copy number data
Teacher 13 months ago, created an answer with at least 3 up-votes. For A: Querying specific TCGA datasets through the MultiAssayExperiment R package
Supporter 16 months ago, voted at least 25 times.
Teacher 16 months ago, created an answer with at least 3 up-votes. For A: Querying specific TCGA datasets through the MultiAssayExperiment R package
Scholar 2.3 years ago, created an answer that has been accepted. For A: Classes and methods for working with segmented copy number data
Scholar 2.5 years ago, created an answer that has been accepted. For A: Classes and methods for working with segmented copy number data
Scholar 2.5 years ago, created an answer that has been accepted. For A: Classes and methods for working with segmented copy number data

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