User: syrttgump

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syrttgump20
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20
Status:
New User
Location:
United States
Last seen:
5 months, 1 week ago
Joined:
4 years, 8 months ago
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Posts by syrttgump

<prev • 11 results • page 1 of 2 • next >
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How to download the TCGA SKCM subtype information?
... Hi, I know the omics and clinical data of the TCGA project can be downloaded through TCGAbiolink, but where can I find the subtype information? I want to find the subtypes of TCGA melanoma (SKCM) patients, like BRAF, NRAS, NF1 mutation patients. Where can I find it? Thanks. Best regards ...
tcga melanoma skcm written 5 months ago by syrttgump20
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Error when runing exomePeak
... Hi everyone, I am using exomePeak (v.2.13.2) to call peaks from chip-seq data. This is the command I am using: result <- exomepeak(GENE_ANNO_GTF=gtf, IP_BAM=f2, INPUT_BAM=f1) But it fails, the error message is: Import genomic features from the file as a GRanges object ... OK Prepare the 'met ...
chipseq exomepeak written 14 months ago by syrttgump20
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Comment: C: How to load WGCNA TOM file?
...   I found it. I can use as.matrix function. TOM data is a dist object. ...
written 2.4 years ago by syrttgump20
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How to load WGCNA TOM file?
... Hi All, I am using WGCNA build a coexpression network. Here is the thing: I use blockwiseModules to build network, and saved TOM to a file. Then I want to calculate connectivity of genes by using the TOM data. I load TOM file into R workspace, it is a large dist class object. How can I transfer it ...
wgcna connectivity written 2.4 years ago by syrttgump20
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Comment: C: Error when install ggbio
... Got it. I will do it as you said. Thank you for your reply! Yes. I installed official version R and it can work now. Best. ...
written 3.8 years ago by syrttgump20
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Comment: C: Error when install ggbio
... I install my R from brew. So should I get R using binary from the official website? ...
written 3.8 years ago by syrttgump20
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Comment: C: Error when install ggbio
... Thanks for your quick reply! It seems no Mac version binary has been provided: "type 'binary' is not supported on this platform" ...
written 3.8 years ago by syrttgump20
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Comment: C: Error when install ggbio
... Thanks for your quick reply! It seems no Mac version binary has been provided: "type 'binary' is not supported on this platform" ...
written 3.8 years ago by syrttgump20
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Error when install ggbio
... Hi everyone, I am using the newest version of R and trying to install ggbio, here is my problem: > biocLite("ggbio") BioC_mirror: https://bioconductor.org Using Bioconductor 3.2 (BiocInstaller 1.20.1), R 3.2.3 (2015-12-10). Installing package(s) ‘ggbio’ % Total % Received % Xferd Average ...
biocinstaller ggbio written 3.8 years ago by syrttgump20 • updated 3.7 years ago by David Rasp0
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Comment: C: Error with featureCounts
... That is the problem, I used the parameter -p -P, and it works now. Thanks. ...
written 4.7 years ago by syrttgump20

Latest awards to syrttgump

Popular Question 2.4 years ago, created a question with more than 1,000 views. For Error with featureCounts
Popular Question 3.8 years ago, created a question with more than 1,000 views. For Error when install ggbio

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