User: parker
parker • 0
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Posts by parker
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... Hello,
I have previously used the bsseq package to get a list of dmrs successfully. However, now I have encountered an error when I run the dmrFinder - please see below:
Any help is much appreciated.
Thank you!
Hannah
> data.tstat
An object of type 'BSseqTstat' with
3142216 methylation l ...
written 2.3 years ago by
parker • 0
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... Thank you very much for your answer - I have looked into this package and it looks more appropriate for targeted analysis. I am following your protocol and I want to try and create the BSraw object with the Bismark output files. However, when I run readBismark(files, colData) I get an error:
Erro ...
written 4.6 years ago by
parker • 0
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... Dear All,
I am analysing data produced from Zymo's Targeted Bisulfite sequencing approach which uses a Fluidigm's array to simultaneously amplify 48 samples using 48 specific genetic loci. I have a heterogenous mix of samples but have started comparing cancers with normal tissue.
I am having some ...
written 4.6 years ago by
parker • 0
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... I am also having the same problem - but when I get the information on the smoothed data:
summary(getMeth(bsseq.data.smoothed))
I see that there are quite a few NAs ~700 for most of my samples. I don't know whether this is because I did a targeted approach and many of the CpGs were not targeted. I ...
written 4.6 years ago by
parker • 0
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