User: yg

yg0
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4 years, 6 months ago
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4 years, 7 months ago
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Posts by yg

<prev • 4 results • page 1 of 1 • next >
2
6.1k
views
2
... Thanks Micheal. The model matrix definition is easy to understand. I now know what the numerical contrast means. Just want to confirm question 4: This is comparing group Y vs group X (numerator vs denominator) under the condition B vs A ((numerator vs denominator), right? By the way, do I need to r ...
written 4.6 years ago by yg0
1
841
views
1
... I have a 2x2 design, below is the piece of R code" dds <- DESeq(ddsHTseq) resultsNames(dds) rld <- rlog(dds) plotPCA(rld, intgroup=c("condition", "group")) However, I found two samples within the same group was quite apart , the sample distance matrix is even worse: samples under the same ...
written 4.6 years ago by yg0 • updated 4.6 years ago by Michael Love25k
2
6.1k
views
2
... Thanks Micheal. The model matrix definition is easy to understand. I now know what the numerical contrast means. Just want to confirm question 4: This is comparing group Y vs group X (numerator vs denominator) under the condition B vs A ((numerator vs denominator), right? By the way, do I need to r ...
written 4.6 years ago by yg0
2
6.1k
views
2
... I have a simple2x2 design for RNASeq DEG analysis with DESqe2. When I read the manual I got quite confused by the examples provided for the two conditions,two group design.  I.  by doing the following, are we trying to find genes expression level differences between conditions A and B or between gr ...
written 4.6 years ago by yg0

Latest awards to yg

Great Question 4.6 years ago, created a question with more than 5,000 views. For DESEQ2 results and contrast (and a relevel question)
Popular Question 4.6 years ago, created a question with more than 1,000 views. For DESEQ2 results and contrast (and a relevel question)

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