User: aiko

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aiko0
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Canada
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Posts by aiko

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Comment: C: EdgeR model formula design matrix
... Hi Aaron, thanks for your reply. ID is sample ID (patient identifier). Do you need additional info? Thanks ...
written 4 months ago by aiko0
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Answer: A: EdgeR model formula design matrix
... Hi Aaron, thanks for your reply. ID is sample ID (patient identifier). Do you need additional info? Thanks    ...
written 4 months ago by aiko0
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EdgeR model formula design matrix
... I have a problem in model formula for design matrix. The data looks like: ID Disease Treatment Time 1 disease1 P 0 1 disease1 T 0 1 disease1 P 2 1 disease1 T 2 2 disease2 P 0 2 di ...
edger design matrix paired samples written 4 months ago by aiko0 • updated 4 months ago by Aaron Lun20k
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extract RLE normalized table
... Hi! I would like to know if it is possible to extract the RLE normalized count table after the CalcNormFactors and how I can extract it. Enrichetta ...
normalization rle table written 2.8 years ago by aiko0 • updated 2.8 years ago by Steve Lianoglou12k
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EdgeR with normalized data
... Hi, I would like to know if it is possible to use EdgeR for differential expression analysis starting from data that are no raw count, but are normalized counts. I just try to skip the command:   d <- calcNormFactors(d) is that way correct? or there is another way? Thanks! Kindly, Enriche ...
r edger de written 3.4 years ago by aiko0 • updated 3.4 years ago by Steve Lianoglou12k

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Popular Question 2.8 years ago, created a question with more than 1,000 views. For EdgeR with normalized data

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