User: aiko

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aiko0
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Canada
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3 years, 2 months ago
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Posts by aiko

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Comment: C: EdgeR model formula design matrix
... Hi Aaron, thanks for your reply. ID is sample ID (patient identifier). Do you need additional info? Thanks ...
written 10 weeks ago by aiko0
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Answer: A: EdgeR model formula design matrix
... Hi Aaron, thanks for your reply. ID is sample ID (patient identifier). Do you need additional info? Thanks    ...
written 10 weeks ago by aiko0
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EdgeR model formula design matrix
... I have a problem in model formula for design matrix. The data looks like: ID Disease Treatment Time 1 disease1 P 0 1 disease1 T 0 1 disease1 P 2 1 disease1 T 2 2 disease2 P 0 2 di ...
edger design matrix paired samples written 10 weeks ago by aiko0 • updated 10 weeks ago by Aaron Lun19k
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extract RLE normalized table
... Hi! I would like to know if it is possible to extract the RLE normalized count table after the CalcNormFactors and how I can extract it. Enrichetta ...
normalization rle table written 2.7 years ago by aiko0 • updated 2.7 years ago by Steve Lianoglou12k
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EdgeR with normalized data
... Hi, I would like to know if it is possible to use EdgeR for differential expression analysis starting from data that are no raw count, but are normalized counts. I just try to skip the command:   d <- calcNormFactors(d) is that way correct? or there is another way? Thanks! Kindly, Enriche ...
r edger de written 3.2 years ago by aiko0 • updated 3.2 years ago by Steve Lianoglou12k

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Popular Question 2.7 years ago, created a question with more than 1,000 views. For EdgeR with normalized data

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