User: agbioinformatics

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Answer: A: DESeq 2, interaction model design
... Thanks Michael, will try that! ...
written 4.2 years ago by agbioinformatics0
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Answer: A: DESeq 2, interaction model design
... Thanks Michael!  If I do block on individual, would you recommend on running separate designs (i.e. within tissue A, block on individuals and find DE?)? ...
written 4.2 years ago by agbioinformatics0
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Answer: A: DESeq 2, interaction model design
... Hello Michael,   Thanks for the response!  So is there a way to block in deseq2 (1.6) (especially in this case, since the 2 tissues were from the same individual)? Also, can you explain a little more about the dds$group command?  After I run this, I get results, so when I look at dds$group, i onl ...
written 4.2 years ago by agbioinformatics0
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DESeq 2, interaction model design
... Gonna try my luck here... So in my experiment, we have 2 different treatments applied to 2 groups of mice (ctrl vs trt, 5 each). Within each mouse, we took 2 different tissue types (tissue, A and B). We'd like to know basically how trt different (within each tissue type and overall ...
deseq2 written 4.2 years ago by agbioinformatics0

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Popular Question 4.2 years ago, created a question with more than 1,000 views. For DESeq 2, interaction model design

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