User: taf

taf • 0

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DESeq2: how to construct the design matrix?

... Hello, I have some questions concerning the construction of design matrices within the DESeq2 package.\\ I constructed the following design matrix, which contains 3 different treatments (T1,T2,T3) in duplicates and 4 controls (ctrl). designMat <- rbind( c(1,0,0,0), c(1,0,0,0), c(0,1,0,0), c ...

deseq2 limma design matrix design matrix written 4.6 years ago by taf • 0 • updated 4.6 years ago by Michael Love ♦ 26k

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Popular Question 4.6 years ago, created a question with more than 1,000 views. For DESeq2: how to construct the design matrix?