User: joanna.l.kelley

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Posts by joanna.l.kelley

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edgeR with related individuals?
... I am estimating differential expression in a time series experiment and some individuals are siblings. I was wonder if there is a specific way to incorporate relatedness into the design matrix for edgeR (or another tool for estimating differential expression)?  ...
edger design matrix related written 7 months ago by joanna.l.kelley0 • updated 7 months ago by James W. MacDonald50k
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edgeR complex nested experiment
... Hi everyone, I'm looking at the example of a complex experimental design on the most recent (April 2015) on page 36 The example states "To find genes that respond to the hormone in any disease group:" > lrt <- glmLRT(fit, coef=10:12) > topTags(lrt) I'm interested in identifying the genes t ...
edger written 4.1 years ago by joanna.l.kelley0 • updated 4.1 years ago by Aaron Lun23k

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