User: mfahim

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mfahim0
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Posts by mfahim

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Comment: C: browserSession for Arabidopsis
... > session <- browserSession("UCSC") > genome(session) <- "araTha1" Error in `genome<-`(`*tmp*`, value = "araTha1") : Failed to set session genome to 'araTha1' and the Error ...
written 4.2 years ago by mfahim0
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Comment: C: browserSession for Arabidopsis
... thanks.. is that TAIR10? and how should I do that? ...
written 4.2 years ago by mfahim0
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browserSession for Arabidopsis
... Hi everyone, I am trying to use run splieR for splicing analysis in my RNAseq data from Arabidopsis. As usual, the packages and instructions in manuals are for anything but plants. Here is my question Arabidopsis genome is not listed in UCSC. What should be alternative to the following chunk in ...
rtracklayer splicer granges written 4.2 years ago by mfahim0 • updated 4.2 years ago by Michael Lawrence11k
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Error in SpliceR and GTF file issue
... I got my RNAseq data from Vendor, who used GFF file in TopHat etc. 1. Can I use GFF file? in other words will SpliceR support GFF or I need GTF? 2. I am getting the following error.. and have no idea what it means.. Creating spliceRList... Error in strsplit(unlist(lapply(isoformDataSplit, FUN ...
splicer cuffdiff written 4.2 years ago by mfahim0 • updated 4.0 years ago by deppt0020
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Help with cummeRbund
... I have biology background and am just starting to learn Rstudio. I have made the database from the cuffdiff output from cufflinks. But now I need to visualize the data and get to meaningful figures for publications. I have installed cummeRbund but I have zilch programming skills and am unable to un ...
rnaseq cummerbund script analysis cuffdiff written 4.4 years ago by mfahim0 • updated 4.4 years ago by andrew.j.skelton73320

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Popular Question 4.2 years ago, created a question with more than 1,000 views. For Error in SpliceR and GTF file issue

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