User: johnlee.johnson

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Posts by johnlee.johnson

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Answer: A: Error with boxplot command from oligo package with raw Affy data
... Yes, that was it! Thanks so much I did not realize you had to choose the level of summarization. For example, putting this command works, boxplot(affyRaw, target="core") ...
written 2.6 years ago by johnlee.johnson0
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Error with boxplot command from oligo package with raw Affy data
... Hello, I am very new to analyzing microarray data and could use some help. I am trying to read in celfiles and plot a boxplot of the probe intensities, but I'm running into a problem. Any help is greatly appreciated! These are the commands I'm running: library(GEOquery) library(oligo) library(limm ...
oligo written 2.6 years ago by johnlee.johnson0 • updated 2.6 years ago by James W. MacDonald51k
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Display subset of rownames in large heatmap?
... Hi everyone, I am trying to create a heatmap in R that has about 20,000 rows and I want to display the rownames, which it does by default. The problem is that there are too many rows to display the names correctly, and only about 50 of the rownames have any real meaning. Is there any bioconductor p ...
heatmap genes rownames written 4.2 years ago by johnlee.johnson0

Latest awards to johnlee.johnson

Popular Question 2.6 years ago, created a question with more than 1,000 views. For Error with boxplot command from oligo package with raw Affy data
Popular Question 2.6 years ago, created a question with more than 1,000 views. For Display subset of rownames in large heatmap?

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