User: kris.petrini

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Posts by kris.petrini

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Answer: A: How to use gene_flank on getBM()
... Thanks for the answer, I've tried to do what you suggested me, but I receive this error: Carico il pacchetto richiesto: IRanges Error in unloadNamespace(package) : namespace ‘IRanges’ is imported by ‘GenomeInfoDb’ so cannot be unloaded Error in library(pkg, character.only = TRUE, logical.return ...
written 3.9 years ago by kris.petrini • 0
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How to use gene_flank on getBM()
... Hi, I have to use getBM to retrive a flanking region with biomart, but I don't find any guide to set the parameters of the attribute "gene_flank" anyone can help me? This is my script: library("biomaRt") agilent_ID<-scan("/home/cristiano/kris/Scrivania/Temporanei_tirocinio/R/Agilent ID spot.cs ...
getbm gene_flank upstream_flank written 3.9 years ago by kris.petrini • 0
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Unclear error in getBM() with attributes and output
... Hi! I'm trying to use the function getBM(), but I have some unclear problems with this function: this is my simple script: library("biomaRt") agilent_ID<-scan("/home/cristiano/kris/Scrivania/Temporanei_tirocinio/R/Agilent ID spot.csv", ,what="character",skip=1,quiet=TRUE)[1] oldmouse<-useM ...
software error getbm written 3.9 years ago by kris.petrini • 0
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Answer: A: How can I use biomaRt on previus databases?
... Ok, thank you very much!   ...
written 3.9 years ago by kris.petrini • 0
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Answer: A: How can I use biomaRt on previus databases?
... Thanks! I've tried and everything works! Just another question, but in this way how can I retrieve genomics sequence of interest like UTR, exons, introns, complete sequence of the gene and flank regions?    ...
written 3.9 years ago by kris.petrini • 0
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How can I use biomaRt on previus databases?
... Hi, I'm trying to use biomaRt on a privius database of mouse, but I receive an error message where it's explain that I can use the function of biomaRt on this database. How can I fix this problem? this is the code that I try to use:   library("biomaRt") oldmouse = useMart(biomart="ENSEMBL_MART_E ...
biomart previus database retrive sequence written 3.9 years ago by kris.petrini • 0

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Scholar 3.9 years ago, created an answer that has been accepted. For A: How can I use biomaRt on previus databases?
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