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User: kris.petrini
kris.petrini • 0
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Posts by kris.petrini
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... Thanks for the answer, I've tried to do what you suggested me, but I receive this error:
Carico il pacchetto richiesto: IRanges
Error in unloadNamespace(package) :
namespace ‘IRanges’ is imported by ‘GenomeInfoDb’ so cannot be unloaded
Error in library(pkg, character.only = TRUE, logical.return ...
written 3.7 years ago by
kris.petrini • 0
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... Hi,
I have to use getBM to retrive a flanking region with biomart, but I don't find any guide to set the parameters of the attribute "gene_flank" anyone can help me?
This is my script:
library("biomaRt")
agilent_ID<-scan("/home/cristiano/kris/Scrivania/Temporanei_tirocinio/R/Agilent ID spot.cs ...
written 3.7 years ago by
kris.petrini • 0
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... Hi!
I'm trying to use the function getBM(), but I have some unclear problems with this function:
this is my simple script:
library("biomaRt")
agilent_ID<-scan("/home/cristiano/kris/Scrivania/Temporanei_tirocinio/R/Agilent ID spot.csv", ,what="character",skip=1,quiet=TRUE)[1]
oldmouse<-useM ...
written 3.7 years ago by
kris.petrini • 0
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4
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... Ok, thank you very much!
...
written 3.7 years ago by
kris.petrini • 0
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965
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... Thanks! I've tried and everything works! Just another question, but in this way how can I retrieve genomics sequence of interest like UTR, exons, introns, complete sequence of the gene and flank regions?
...
written 3.7 years ago by
kris.petrini • 0
4
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... Hi, I'm trying to use biomaRt on a privius database of mouse, but I receive an error message where it's explain that I can use the function of biomaRt on this database. How can I fix this problem?
this is the code that I try to use:
library("biomaRt")
oldmouse = useMart(biomart="ENSEMBL_MART_E ...
written 3.7 years ago by
kris.petrini • 0
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3.7 years ago,
created an answer that has been accepted.
For A: How can I use biomaRt on previus databases?
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