User: shilin.zhao
shilin.zhao • 30
- Reputation:
- 30
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- New User
- Location:
- United States
- Last seen:
- 2 weeks, 2 days ago
- Joined:
- 3 years ago
- Email:
- s**********@vanderbilt.edu
Posts by shilin.zhao
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... Hello,
I've searched on this site and found some questions about merging vcf with same samples or variants by rbind or cbind. My questions is about merging vcf files with different samples and variants? Is there any function which can do it? Thanks!
For example:
vcf file1:
chr1 Pos1 Sample ...
written 15 months ago by
shilin.zhao • 30
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... Thanks, Hervé! Great answers for all the questions!
Shilin
...
written 20 months ago by
shilin.zhao • 30
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... I've find the reason for the first question. It related to the version. The latest version of TxDb.Hsapiens.UCSC.hg38.knownGene was build in 2015. And when I changed to the development version of TxDb.Hsapiens.UCSC.hg38.knownGene, which was build in 2016/09, the result is correct.
But I found anoth ...
written 20 months ago by
shilin.zhao • 30
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... Hello,
I am going to do some mapping from gene to their chromosome regions. And I found some gene with different chromosome regions as in UCSC genome browser. For example, gene 4499 (MT1M) is in chr16:56632233-56633986 in UCSC genome browser. But in R, it is in chr16:56617461-56633986, because i ...
written 20 months ago by
shilin.zhao • 30
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