User: shilin.zhao

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shilin.zhao30
Reputation:
30
Status:
New User
Location:
United States
Last seen:
8 months ago
Joined:
2 years, 6 months ago
Email:
s**********@vanderbilt.edu

Posts by shilin.zhao

<prev • 4 results • page 1 of 1 • next >
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merge vcf files with different samples and variants?
... Hello,  I've searched on this site and found some questions about merging vcf with same samples or variants by rbind or cbind. My questions is about merging vcf files with different samples and variants? Is there any function which can do it? Thanks!   For example: vcf file1: chr1   Pos1 Sample ...
vcf written 8 months ago by shilin.zhao30
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Answer: A: Transcripts in TxDb.Hsapiens.UCSC.hg38.knownGene but not in ucsc genome brower
... Thanks, Hervé! Great answers for all the questions! Shilin ...
written 13 months ago by shilin.zhao30
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Answer: A: Transcripts in TxDb.Hsapiens.UCSC.hg38.knownGene but not in ucsc genome brower
... I've find the reason for the first question. It related to the version. The latest version of TxDb.Hsapiens.UCSC.hg38.knownGene was build in 2015. And when I changed to the development version of TxDb.Hsapiens.UCSC.hg38.knownGene, which was build in 2016/09, the result is correct. But I found anoth ...
written 13 months ago by shilin.zhao30
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Transcripts in TxDb.Hsapiens.UCSC.hg38.knownGene but not in ucsc genome brower
... Hello,   I am going to do some mapping from gene to their chromosome regions. And I found some gene with different chromosome regions as in UCSC genome browser. For example, gene 4499 (MT1M) is in chr16:56632233-56633986 in UCSC genome browser. But in R, it is in chr16:56617461-56633986, because i ...

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