User: sidb

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sidb0
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Posts by sidb

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Comment: C: Withdraw package from Bioconductor
... Thank you! I will archive the github repo when the package is not part of any supported Bioc release. Until then, I can put a deprecation notice on the README. ...
written 10 weeks ago by sidb0
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Withdraw package from Bioconductor
... Hello, We wish to withdraw our package "GoogleGenomics" from future Bioconductor releases. The package no longer serves a purpose as the original project has changed directions. This will involve not including GoogleGenomics in Bioc 3.8, and archiving the github repo under the Bioconductor organiz ...
bioconductor written 10 weeks ago by sidb0 • updated 10 weeks ago by shepherl ♦♦ 730
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Comment: C: Extension to GoogleGenomics: getVariantCalls
... Thank you Vince for your contribution. This feature is now also included in the Bioconductor github repository, and will be in the next release. ...
written 20 months ago by sidb0
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Bug in VRanges conversion in VariantAnnotation (devel)
... I am seeing an error in the devel version of VariantAnnotation for VCF to VRanges conversion after this commit. > library(VariantAnnotation) > ​fl <- system.file("extdata", "chr22.vcf.gz", package="VariantAnnotation") > vcf <- readVcf(fl, "hg19") > as(vcf, "VRanges") Error in if ...
variantannotation written 2.2 years ago by sidb0 • updated 2.2 years ago by Michael Lawrence10k

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