User: bgel

gravatar for bgel
bgel30
Reputation:
30
Status:
New User
Location:
Spain
Website:
http://www.imppc.org/r...
Scholar ID:
Google Scholar Page
Last seen:
2 years, 5 months ago
Joined:
4 years, 3 months ago
Email:
b***@imppc.org

Bioinformatician at Eduard Serra's Hereditary Cancer group at the IMPPC (Institute of Predictive and Personalized Medicine of Cancer) in Badalona, Barcelona, Spain. Trying to understand the biology behind benign and malignant tumors arising in the context of Neurofibromatosis Type 1 using genomics and epigenomics. Developing new NGS based genetic diagnostics of hereditary cancer and moving them to the clinic.

Posts by bgel

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Answer: A: regioneR: error when verbose=TRUE
... That's true, thanks for the heads up! I think when we updated the permTest function to deal with multiple evaluation functions we broke the code supporting the verbose output in (basically a progress bar) when performing the computations in parallel. We will fix this in the next version of regioneR, ...
written 3.2 years ago by bgel30
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Answer: A: permutation test against intervals
... Our package regioneR was included in the latest version of Bioconductor and is designed specifically to do that using permutation tests. Assuming data1 and data2 are data.frames you can do something like: pt <- overlapPermTest(A=data1, B=data2, ntimes=100) plot(pt) This will perform a permut ...
written 4.3 years ago by bgel30

Latest awards to bgel

Teacher 4.3 years ago, created an answer with at least 3 up-votes. For A: permutation test against intervals
Autobiographer 4.3 years ago, has more than 80 characters in the information field of the user's profile.

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