User: ugis

gravatar for ugis
ugis20
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New User
Location:
United Kingdom
Last seen:
1 year, 7 months ago
Joined:
4 years, 4 months ago
Email:
u***@ebi.ac.uk

Posts by ugis

<prev • 5 results • page 1 of 1 • next >
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Comment: C: function getAE from ArrayExpress needs update because EBI has switched to https
... After looking more at this - the package will need to be fixed, like Bernd suggested. HTTP->HTTPS redirect is in place already (e.g., http://www.ebi.ac.uk/arrayexpress/xml/v2/files/E-MTAB-5225 works in a browser), the problem is the XML package that cannot deal with this. ...
written 2.0 years ago by ugis20
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Answer: A: ArrayExpress unable to find raw data: "Experiment has no raw files available"
...   Keith - the package was written about 10 years ago, and the short description is "Access the ArrayExpress Microarray Database at EBI and build Bioconductor data structures: ExpressionSet, AffyBatch, NChannelSet". We haven't had resources to bring this in to the sequencing data world yet. Best, ...
written 2.9 years ago by ugis20
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Answer: A: ArrayExpress unable to find raw data: "Experiment has no raw files available"
... Hi Keith, ArrayExpress package at this point will be useful only for microarray data, so "Experiment has no raw files available" message is correct. Best, Ugis   ...
written 2.9 years ago by ugis20
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Comment: C: arrayExpress: problem running code from the vignette
... Hi, We cannot replicate the problem - it could be that there was a problem with ArrayExpress at the time. Could you try again please? Best, Ugis ...
written 3.0 years ago by ugis20
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Answer: A: arrayExpress: problem running code from the vignette
... Dear Kevin, Thanks for pointing out the problem with queryAE, we'll check what is going on. However, since you mention that you are interested in RNA-seq datasets - the ArrayExpress package will be useful only for microarray data, see the description of the package: "Access the ArrayExpress Reposi ...
written 3.4 years ago by ugis20

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