User: zhengx

gravatar for zhengx
zhengx30
Reputation:
30
Status:
New User
Location:
United States
Last seen:
1 month, 1 week ago
Joined:
4 years, 3 months ago
Email:
z*****@u.washington.edu

Posts by zhengx

<prev • 18 results • page 2 of 2 • next >
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Answer: A: SeqArray_1.19.2, SeqArray::info() for example gds data does not return correct c
... It seems I should use .onLoad instead of .onAttach.   ...
written 21 months ago by zhengx30
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Answer: A: SeqArray_1.19.2, SeqArray::info() for example gds data does not return correct c
... You should explicitly import the namespace of SeqArray. please use library(SeqArray) or require(SeqArray)     ...
written 21 months ago by zhengx30
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Answer: A: Cannot read plink files correctly
... Start snpgdsBED2GDS ...     BED file: "lebanon_complete.bed" in the SNP-major mode (Sample X SNP)     FAM file: "lebanon_complete.bim", DONE.     BIM file: "lebanon_complete.fam", DONE. You have used the wrong FAM and BIM files.   ...
written 2.3 years ago by zhengx30
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Answer: A: SNPRelate Dendrogram Point Colors and Shapes
... Please try dendrapply() function, snpgdsCutTree() use dendrapply() internally to add different pch and colors.     ...
written 3.2 years ago by zhengx30
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Answer: A: unable to update mgcv package
... See: https://github.com/zhengxwen/SNPRelate/issues/2, you might have to modify R Makeconf file which is in the folder of R lib.     ...
written 3.7 years ago by zhengx30
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Comment: C: NA values in snpgdsDiss dissimilarity matrix
... Can you ran "snpgdsSampMissRate" to calculate the missing rate per sample? Then you could identify which samples cause the trouble. ...
written 3.8 years ago by zhengx30
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Comment: C: NA values in snpgdsDiss dissimilarity matrix
... Can you ran "snpgdsSampMissRate" to calculate the missing rate per sample? Then you could identify which samples cause the trouble. ...
written 3.8 years ago by zhengx30
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Answer: A: NA values in snpgdsDiss dissimilarity matrix
... Are you able to run snpgdsIBS Identity-By-State analysis? Is there any missing value in the result of IBS analysis also?   ...
written 3.8 years ago by zhengx30

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