User: msp.cse

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msp.cse0
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Posts by msp.cse

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Gene Ontolology and Annotation
... How to create the following files using SQL queries in R from GO.db, org.Sc.sgd.db, and org.Hs.eg.db, respectively. gene_ontology.obo gene_association.sgd gene_association.goa_human   Please help me. ...
annotation org.hs.eg.db go.db gene ontolology org.sc.sgd.db written 22 months ago by msp.cse0 • updated 22 months ago by Diego Diez700
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Comment: C: Gene Ontolology and Annotation
... Thank you Marc. Please provide me the original copies of the three files: gene_ontology.obo, gene_association.sgd, gene_association.goa_human Actually I need to compare some similarity measures (protein-protein interaction) using gene ontology. I am doing so by using GO.db_3.1.2, org.Sc.sgd.db_3.1 ...
written 2.4 years ago by msp.cse0
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Comment: C: Gene Ontolology and Annotation
... Thanks James, Can you tell me the SQL queries for the same? ...
written 2.4 years ago by msp.cse0
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Comment: C: Gene Ontolology and Annotation
... Thanks both of you. But the directory maintains the updated versions. I need exatly the version which are used in GO.db_3.1.2, org.Sc.sgd.db_3.1.2, and org.Hs.eg.db_3.1.2.   ...
written 2.4 years ago by msp.cse0
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Gene Ontolology and Annotation
... I find difficulties to get exact version of Gene Ontology and their annotations used in GO.db_3.1.2, org.Sc.sgd.db_3.1.2, and org.Hs.eg.db_3.1.2 from http://geneontology.org/. So, please provide me the following three files used in mentioned packages: gene_ontology.obo gene_association.sgd gene_ ...
version written 2.5 years ago by msp.cse0 • updated 2.5 years ago by Marc Carlson7.2k

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