User: kamal.fartiyal84

Reputation:
10
Status:
New User
Location:
Cancer Research UK Cambridge Institute
Last seen:
6 months, 1 week ago
Joined:
3 years, 4 months ago
Email:
k***************@gmail.com

Posts by kamal.fartiyal84

<prev • 23 results • page 1 of 3 • next >
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Answer: A: How to manipulate assayData in MSnSetList
... Thanks Laurent. It works. ...
written 6 months ago by kamal.fartiyal8410
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How to manipulate assayData in MSnSetList
... I want to perform some operation to the assay data of MSnSet within a MSnSetList but I think its now allowed. Could you please let me know how to do such a thing? A simple example is shown below. library(MSnbase) library(pRolocdata) data(dunkley2006) dun <- split(dunkley2006, "replicate") exprs ...
msnbase written 6 months ago by kamal.fartiyal8410
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Answer: A: Combining two MSnSet
... Hi, One small confusing thing is the following message in the processing information where it should mention the dimensions of the combined MSnSets. Have a look into the text marked in bold.  > exp12 <- MSnbase::combine(MSnset_P1, MSnset_P2) > exp12 MSnSet (storageMode: lockedEnvironmen ...
written 8 months ago by kamal.fartiyal8410
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Answer: A: Combining two MSnSet
... Hi Laurent, I got it now. When combining different samples featureNames has to defined as protein accession (or the combining variable). In my dataset it had no featureNames but just numbers so thats why it was giving wrong results. It does not give any error message but just wrong results. Thanks ...
written 8 months ago by kamal.fartiyal8410
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Answer: A: Combining two MSnSet
... Hi, The combine function for combining two different MSnSets with completely different sample names is producing erroneous results. So instead of returning as mentioned in the vignette unique (n1)+unique (n2)+ shared (n1,n2) rows, it is returning an MSnSet with nrow of max(n1,n2). I tried various ...
written 8 months ago by kamal.fartiyal8410
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Answer: A: error displaying bam files
... Hello Matrin, Thanks for your reply. Yes, it works now.         ...
written 10 months ago by kamal.fartiyal8410
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error displaying bam files
... Getting following error on displaying the content of bam file.  > aln <- readGAlignments("sample.bam") > aln GAlignments object with 32984922 alignments and 0 metadata columns: Error in (function (classes, fdef, mtable)  :   unable to find an inherited method for function ‘rglist’ for ...
genomicalignments written 11 months ago by kamal.fartiyal8410
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Combining two MSnSet
... Hi, Is it possible to combine two MSnSet to create a single one by combining based on common protein or otherwise? Kamal     ...
msnbase written 12 months ago by kamal.fartiyal8410
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Answer: A: readFastq error reading Nanopore fastq
... Thanks Martin, I will wait for the update. ...
written 13 months ago by kamal.fartiyal8410
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readFastq error reading Nanopore fastq
... Hi,  I am getting the following error with readFastq white trying to read in Nanopore fastq files: Error: Input/Output  file(s):     /mnt/scratchb/bioinformatics/kishor01/projects/Nanopore/MinION/MN15691/fastq/MN15691.fastq   message: line too long /mnt/scratchb/bioinformatics/kishor01/projects ...
shortread written 13 months ago by kamal.fartiyal8410

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