User: kamal.fartiyal84

Reputation:
10
Status:
New User
Location:
Cancer Research UK Cambridge Institute
Last seen:
3 days, 3 hours ago
Joined:
2 years, 5 months ago
Email:
k***************@gmail.com

Posts by kamal.fartiyal84

<prev • 17 results • page 1 of 2 • next >
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error displaying bam files
... Getting following error on displaying the content of bam file.  > aln <- readGAlignments("sample.bam") > aln GAlignments object with 32984922 alignments and 0 metadata columns: Error in (function (classes, fdef, mtable)  :   unable to find an inherited method for function ‘rglist’ for ...
genomicalignments written 3 days ago by kamal.fartiyal8410 • updated 3 days ago by Martin Morgan ♦♦ 20k
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Combining two MSnSet
... Hi, Is it possible to combine two MSnSet to create a single one by combining based on common protein or otherwise? Kamal     ...
msnbase written 7 weeks ago by kamal.fartiyal8410 • updated 7 weeks ago by Laurent Gatto840
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Answer: A: readFastq error reading Nanopore fastq
... Thanks Martin, I will wait for the update. ...
written 11 weeks ago by kamal.fartiyal8410
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readFastq error reading Nanopore fastq
... Hi,  I am getting the following error with readFastq white trying to read in Nanopore fastq files: Error: Input/Output  file(s):     /mnt/scratchb/bioinformatics/kishor01/projects/Nanopore/MinION/MN15691/fastq/MN15691.fastq   message: line too long /mnt/scratchb/bioinformatics/kishor01/projects ...
shortread written 11 weeks ago by kamal.fartiyal8410
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Comment: C: Missing value imputation
... Thanks very much for your comments. ...
written 3 months ago by kamal.fartiyal8410
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Answer: A: Missing value imputation
... Thanks Laurent for your reply. So in my dataset one condition is supposed to be have more missing peptide than the other due to biological reasons than the other. So filtering strategy I am employing is as below: Condition A (5 Replicates) supposed to have more peptide than Condition B (5 Replicate ...
written 3 months ago by kamal.fartiyal8410 • updated 3 months ago by Laurent Gatto840
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Missing value imputation
... Hi, I want to perform missing value imputation on TMT-tags based quantitative proteomics data. I would be performing mixed imputation by applying two different methods (MCAR/MNAR) on two different groups within same dataset. Should I perform the imputation on raw or log transformed peptide intensit ...
msnbase written 3 months ago by kamal.fartiyal8410
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Answer: A: error reading bismark sam/bam files
... Thanks it worked with the latest version. ...
written 5 months ago by kamal.fartiyal8410
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error reading bismark sam/bam files
... I am getting the following error on reading bismark sorted sam/bam files. Its crashing the R session everytime. The sam/bam files are sorted by samtools.   > my.methRaw=processBismarkAln( location = paths[i], sample.id=samples[i], treatment=grps[i],assembly="hg19", read.context="CpG", save.fold ...
methylkit written 5 months ago by kamal.fartiyal8410
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Answer: A: methylPipe meth.call issue with sorted SAM file
... One of the user sorted this error because instead of the input folder, he was specifying an individual file.sam, resulting in this error message. Please make sure to provide the correct parameters as mentioned in documentation. If someone still face same error then let me know.  ...
written 8 months ago by kamal.fartiyal8410

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