User: xiaojing.wang

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Posts by xiaojing.wang

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Job: Postdoc in computational cancer biology (San Antonio, TX, US)
... Keywords Bioinformatics, Proteogenomics, Computational biology, Sequencing   Job Description: We are searching for a highly motivated postdoctoral fellow to work on integrative analysis of cancer proteome and genome at the Greehey Children’s Cancer Research Institute (GCCRI), The University of T ...
job written 9 days ago by xiaojing.wang50
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Answer: A: Error with PrepareAnnotationRefseq: "tablenametotrack2: UCSC table "refGene" is
... I have updated the package on release 3.7 and devl version. On Wed, Jun 27, 2018 at 4:19 PM, samupatt [bioc] <noreply@bioconductor.org> wrote: > Activity on a post you are following on support.bioconductor.org > > User samupatt <https: support.bioconductor.org="" u="" 16298=""/&g ...
written 9 days ago by xiaojing.wang50
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Answer: A: aaVariation function bug (Methonine instead of Leucine)
... The function has been updated. Thank you. For you reference, in function translate(), codons 'TTG' and 'CTG' translated into 'M' if they located as the 1st codon in the sequence. Xiaojing On Mon, Apr 16, 2018 at 6:52 AM, georges.bedran [bioc] < noreply@bioconductor.org> wrote: > Activit ...
written 9 days ago by xiaojing.wang50
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Answer: A: customProDB, OutputVarproseq function update (snvproseq)
... Thanks. I'll make some changes of several functions in a few days. Xiaojing From: georges.bedran [bioc] [mailto:noreply@bioconductor.org] Sent: Wednesday, December 07, 2016 7:52 AM To: Wang, Xiaojing <xiaojing.wang@vanderbilt.edu> Subject: [bioc] OutputVarproseq function update (snvproseq) ...
written 20 months ago by xiaojing.wang50
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Answer: A: CustomproDB JunctionType function
... Thanks for pointing this out. It must be a typo. I’ll update the package soon. Xiaojing From: georges.bedran [bioc] [mailto:noreply@bioconductor.org] Sent: Thursday, June 30, 2016 5:51 AM To: Wang, Xiaojing <xiaojing.wang@vanderbilt.edu> Subject: [bioc] CustomproDB JunctionType function Act ...
written 2.1 years ago by xiaojing.wang50
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Comment: C: customProDB: error aberrant fasta from indels
... Please use customProDB_1.8.2. http://bioconductor.org/packages/release/bioc/html/customProDB.html Xiaojing From: kristenbeck527 [bioc] [mailto:noreply@bioconductor.org] Sent: Friday, July 10, 2015 2:39 PM To: Wang, Xiaojing Subject: [bioc] C: customProDB: error aberrant fasta from indels Activity ...
written 3.1 years ago by xiaojing.wang50
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Answer: A: customProDB: error aberrant fasta from indels
... Please send the VCF file to my email address and also paste the output of sessionInfo() of your R environment. Xiaojing From: kristenbeck527 [bioc] [mailto:noreply@bioconductor.org] Sent: Thursday, July 09, 2015 2:57 PM To: Wang, Xiaojing Subject: [bioc] customProDB: error aberrant fasta from inde ...
written 3.1 years ago by xiaojing.wang50
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Answer: A: customProDB: issues getting dbSNP data for human (hg19)
... Try using ‘snp138’, ‘snp141’ or ‘snp142’ instead. You may use the code below to check the current dbSNP version provided by the UCSC table browser. I’ll update the document accordingly. library(rtracklayer) session <- browserSession() genome(session) <- 'hg19' tmp <- trackNames(session) tm ...
written 3.1 years ago by xiaojing.wang50
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Answer: A: customProDB: issues getting dbSNP data for non-model organism
... The function PrepareAnnotationEnsembl() is unable to retrieve dbSNP information for species other than human and mouse. Because we choose to only download the data in coding region through UCSC table browser for performance reason (the dbSNP data is huge and is getting larger and larger). You can u ...
written 3.1 years ago by xiaojing.wang50

Latest awards to xiaojing.wang

Scholar 3.2 years ago, created an answer that has been accepted. For A: customProDB: error aberrant fasta from indels
Scholar 3.2 years ago, created an answer that has been accepted. For A: customProDB: issues getting dbSNP data for human (hg19)

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