User: Deepak Tanwar

gravatar for Deepak Tanwar
Reputation:
10
Status:
New User
Location:
McGill University, Canada
Website:
https://www.linkedin.c...
Twitter:
d_k_tanwar
Last seen:
3 months, 1 week ago
Joined:
2 years, 5 months ago
Email:
d*******@hotmail.com

I received my Bachelor in Technology with major in Bioinformatics from Amity University Rajasthan, India in 2014. I did my Bachelor thesis at University of Jena, Germany, where I worked on a Sepsis patient data set and got my thesis published with GRIN publishers. I took my first job as a Visiting Scientist at University of Alabama at Birmingham, USA in 2014. I worked on Cancer patient datasets obtained from TCGA, ICGC and Cosmic consortiums. My findings suggest that mitochondria directed therapies can impact survival of epithelial ovarian cancer patients, which is published in Oncotarget. I have also worked on Proteomes from Pfam and Uniprot databases, aiming to create a N-gram language models of protein domain architecture to investigate evolution and to derive a new method of phylogenetic tree construction. My background and training is in Bioinformatics (Data Science) and am currently pursuing a M.Sc. at McGill University, Montréal, Canada.

Posts by Deepak Tanwar

<prev • 15 results • page 1 of 2 • next >
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IGV like plots with GViz
... Hello everyone, I would like to create coverage plots like IGV (like we obtain after autoscale) How I am trying to do? Read the bam files with windowCounts from csaw package`. Normalized the read counts. code to make data track: track <- DataTrack(range = data, ge ...
gviz R igv written 3 months ago by Deepak Tanwar10
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Answer: A: EdgeR - topTags sort up and down?
... n = "all" ...
written 19 months ago by Deepak Tanwar10
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Comment: C: Upper triangular matrix heatmap using pheatmap package
... So, I will update it from github. ...
written 23 months ago by Deepak Tanwar10
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Comment: C: Upper triangular matrix heatmap using pheatmap package
... Hi, I am not yet able to figure out that: test = matrix(rnorm(200), 20, 10) test[1:10, seq(1, 10, 2)] = test[1:10, seq(1, 10, 2)] + 3 test[11:20, seq(2, 10, 2)] = test[11:20, seq(2, 10, 2)] + 2 test[15:20, seq(2, 10, 2)] = test[15:20, seq(2, 10, 2)] + 4 colnames(test) = paste("Test", 1:10, s ...
written 23 months ago by Deepak Tanwar10
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Comment: C: Upper triangular matrix heatmap using pheatmap package
... I tried to perform the code, but I am getting following error. I also tried to look for the error: Error in if (cluster_rows) { : argument is not interpretable as logical In addition: Warning message: In if (cluster_rows) { : the condition has length > 1 and only the first element will be u ...
written 23 months ago by Deepak Tanwar10
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Comment: C: Upper triangular matrix heatmap using pheatmap package
... It's perfect Raivo.  Is there a way to also show dendogram along with heatmap? I tried  pheatmap(mat, cluster_col = hc$order, cluster_row = hc$order) ...
written 23 months ago by Deepak Tanwar10
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Comment: C: Upper triangular matrix heatmap using pheatmap package
... It does work, but I want the rows and columns to be clustered.  ...
written 23 months ago by Deepak Tanwar10
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Upper triangular matrix heatmap using pheatmap package
... How can I plot only upper triangular portion of a gene by gene correlation matrix with pheatmap package ? Even if I try to remove lower triangle by: mat[lower.tri(mat)] <- "NA"  it does not work. ...
pheatmap written 23 months ago by Deepak Tanwar10
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Reactome pathway analysis using ReactomePA
... I want to use ReactomePA package for reactome pathway analysis. Problem is, It takes EntrezID as input. Is there a way to use ReactomePA with Gene Symbols. I know that I can map Gene Symbols with EntrezID, but I don't want to do that. I want to run analysis with Gene Symbols. ...
R bioconductor reactomepa written 2.1 years ago by Deepak Tanwar10 • updated 2.1 years ago by kmezhoud0
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Heatmap Plotting in R
... Hi, I want to know which Bioconductor package could help me in plotting a heatmap like this:  ...
R bioconductor heatmap written 2.3 years ago by Deepak Tanwar10

Latest awards to Deepak Tanwar

Popular Question 5 months ago, created a question with more than 1,000 views. For Upper triangular matrix heatmap using pheatmap package
Popular Question 19 months ago, created a question with more than 1,000 views. For Heatmap Plotting in R
Autobiographer 2.5 years ago, has more than 80 characters in the information field of the user's profile.

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