User: Deepak Tanwar

gravatar for Deepak Tanwar
Reputation:
10
Status:
New User
Location:
McGill University, Canada
Website:
https://www.linkedin.c...
Twitter:
d_k_tanwar
Last seen:
2 months ago
Joined:
3 years, 10 months ago
Email:
d*******@hotmail.com

I received my Bachelor in Technology with major in Bioinformatics from Amity University Rajasthan, India in 2014. I did my Bachelor thesis at University of Jena, Germany, where I worked on a Sepsis patient data set and got my thesis published with GRIN publishers. I took my first job as a Visiting Scientist at University of Alabama at Birmingham, USA in 2014. I worked on Cancer patient datasets obtained from TCGA, ICGC and Cosmic consortiums. My findings suggest that mitochondria directed therapies can impact survival of epithelial ovarian cancer patients, which is published in Oncotarget. I have also worked on Proteomes from Pfam and Uniprot databases, aiming to create a N-gram language models of protein domain architecture to investigate evolution and to derive a new method of phylogenetic tree construction. My background and training is in Bioinformatics (Data Science) and am currently pursuing a M.Sc. at McGill University, Montréal, Canada.

Posts by Deepak Tanwar

<prev • 20 results • page 1 of 2 • next >
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Query based on PMIDs
... Hello!   I have a list of PMIDs and would like to query `GEOquery` and `SRAdb` to see if there is data submitted from these papers, and if submitted, I would like to download.   How can I do that? ...
geoquery sradb written 4 months ago by Deepak Tanwar10
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Comment: C: Internal bug of DMR-Seq?
... Yes, I will send that. When I removed those chromosomes, it worked fine and I got results after 10 permutations. ...
written 5 months ago by Deepak Tanwar10
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Comment: C: Internal bug of DMR-Seq?
... I did that as well. Nothing is outdated. I am tying by removing the "not normal" (extra chromosomes) like  JH792828.1, etc. But, I assume, including these extra chromosomes should not create any error ...
written 5 months ago by Deepak Tanwar10
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Comment: C: Internal bug of DMR-Seq?
... Also,   I have tried to install and run analysis in two ways: - installing `dmrseq` from GitHub - installing `dmrseq` from Bioconductor ...
written 5 months ago by Deepak Tanwar10
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Comment: C: Internal bug of DMR-Seq?
... Hi, I am facing a similar issue with dmrseq.   I am running it on test samples (on some regions of the genome). Here is the error:    Assuming the test covariate group is a factor. Condition: 2 vs 1 Parallelizing using 16 workers/cores (backend: BiocParallel:MulticoreParam). Computing on 1 chr ...
written 5 months ago by Deepak Tanwar10
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IGV like plots with GViz
... Hello everyone, I would like to create coverage plots like IGV (like we obtain after autoscale) How I am trying to do? Read the bam files with windowCounts from csaw package`. Normalized the read counts. code to make data track: track <- DataTrack(range = data, ge ...
gviz R igv written 21 months ago by Deepak Tanwar10
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Answer: A: EdgeR - topTags sort up and down?
... n = "all" ...
written 3.0 years ago by Deepak Tanwar10
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Comment: C: Upper triangular matrix heatmap using pheatmap package
... So, I will update it from github. ...
written 3.3 years ago by Deepak Tanwar10
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Comment: C: Upper triangular matrix heatmap using pheatmap package
... Hi, I am not yet able to figure out that: test = matrix(rnorm(200), 20, 10) test[1:10, seq(1, 10, 2)] = test[1:10, seq(1, 10, 2)] + 3 test[11:20, seq(2, 10, 2)] = test[11:20, seq(2, 10, 2)] + 2 test[15:20, seq(2, 10, 2)] = test[15:20, seq(2, 10, 2)] + 4 colnames(test) = paste("Test", 1:10, s ...
written 3.3 years ago by Deepak Tanwar10
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Comment: C: Upper triangular matrix heatmap using pheatmap package
... I tried to perform the code, but I am getting following error. I also tried to look for the error: Error in if (cluster_rows) { : argument is not interpretable as logical In addition: Warning message: In if (cluster_rows) { : the condition has length > 1 and only the first element will be u ...
written 3.3 years ago by Deepak Tanwar10

Latest awards to Deepak Tanwar

Great Question 20 months ago, created a question with more than 5,000 views. For Heatmap Plotting in R
Popular Question 20 months ago, created a question with more than 1,000 views. For Graph viewer for Reactome Pathways
Popular Question 22 months ago, created a question with more than 1,000 views. For Upper triangular matrix heatmap using pheatmap package
Popular Question 3.0 years ago, created a question with more than 1,000 views. For Heatmap Plotting in R
Autobiographer 3.9 years ago, has more than 80 characters in the information field of the user's profile.

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