User: mbio.kyle

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mbio.kyle0
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Posts by mbio.kyle

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Using sva ComBat on DESeq2 Data
... Hello, (I gave a lengthy explanation of my experiment here, skip to TLDR if so inclined) I am working on a RNASeq experiement. I have a treatment condition which involves a mutant protein (supplied by a plasmid vector), so I essentially have four conditions: 1. Control - No vector, target protei ...
rnaseq sva deseq2 combat de written 3.8 years ago by mbio.kyle0 • updated 3.8 years ago by Michael Love25k
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Comment: C: edgeR contrast formulation question
... Hello Ryan, Thanks for this response. I am not specifying my design using the ~0 + Group format. I am going to just include my whole R script. I am not opposed to digging into the results manually but I would like to clarify if what I am doing initially is even correct. library("edgeR") countFil ...
written 4.1 years ago by mbio.kyle0
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edgeR contrast formulation question
... I am working with edgeR to perform some differential expression work. EdgeR has been a dream to work with and I have quickly reached the point where I am trying to ask some more complicated questions. My dataset consists of the following: I have a human cell line, which is either infected or uninf ...
rnaseq edger differential expression written 4.1 years ago by mbio.kyle0 • updated 4.1 years ago by Ryan C. Thompson7.4k

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Popular Question 3.7 years ago, created a question with more than 1,000 views. For Using sva ComBat on DESeq2 Data

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