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questions
1
vote
2
replies
614
views
select with org.Mm.eg.db does not give ENSEMBL ids
org.Mm.eg.db
15 months ago
raf4
▴ 20
1
vote
2
replies
624
views
should smooth quantile normalization be used with limma-voom?
limma-voom
smooth-quantile-normalization
quantro
21 months ago
raf4
▴ 20
0
votes
1
reply
2.1k
views
How to remove duplicate files per case in TCGAbiolonks
TCGAbiolinks
2.4 years ago
raf4
▴ 20
1
vote
2
replies
1.0k
views
Difficulty dowloading hg38 cnv data in tcgabiolinks
TCGAbiolinks
cnv
2.5 years ago • updated 2.4 years ago
raf4
▴ 20
4
votes
14
replies
1.5k
views
Application of quantro to RNASeq: I do not get the same results as are in the quantro paper supplement
quantro
RNASeq
updated 3.9 years ago by
Stephanie Hicks
▴ 80 • written 4.0 years ago by
raf4
▴ 20
0
votes
1
reply
1.6k
views
Application of RUV to a small Nanostring dataset
RUV
Nanostring
RUV-III
updated 4.0 years ago by
hermidalc
▴ 20 • written 4.7 years ago by
raf4
▴ 20
0
votes
13
replies
2.6k
views
error message with BiocManager::install on Mac console that's not on mac command line
BiocManager
Mac
updated 4.8 years ago by
Martin Morgan
25k • written 4.8 years ago by
raf4
▴ 20
6
votes
8
replies
2.7k
views
Use of pseudoalignment estimated counts as input to edgeR and Limma-Voom
RNASeq-quantification
edgeR
TPM
updated 5.2 years ago by
Gordon Smyth
50k • written 5.2 years ago by
raf4
▴ 20
1
vote
5
replies
1.1k
views
Error message with Voom with blocked design matrix
voom
blocked design
limma
updated 5.9 years ago by
Gordon Smyth
50k • written 5.9 years ago by
raf4
▴ 20
2
votes
1
reply
869
views
Minimum in Voomplot
limma
voom
updated 6.2 years ago by
Ryan C. Thompson
★ 7.9k • written 6.2 years ago by
raf4
▴ 20
2
votes
2
replies
937
views
should subgroups of comparisons be analyzed separately in Limma
limma design matrix
updated 6.4 years ago by
Gavin Kelly
▴ 680 • written 6.4 years ago by
raf4
▴ 20
0
votes
4
replies
1.2k
views
discrepancy between genes corresponding to gene ontology terms in org.Mm.eg.db and in AMIGO
gene ontology
6.5 years ago
raf4
▴ 20
0
votes
2
replies
1.5k
views
problem running featurecounts using hg38 in-built annotation
featurecounts
hg38
6.9 years ago
raf4
▴ 20
0
votes
2
replies
3.9k
views
Problem running featurecounts in Rsubread on GFF file
rsubread
featurecounts
gff
Grch38.p7 vs hg38
6.9 years ago
raf4
▴ 20
0
votes
5
replies
1.6k
views
Rsubread crash on Mac during alignment
software error
rsubread
7.2 years ago • updated 6.9 years ago
raf4
▴ 20
4
votes
10
replies
2.0k
views
Subject: Strange glitch in Voom curve resulting from batch effects
limma
voom
batcheffect
covariate
updated 7.0 years ago by
Gordon Smyth
50k • written 7.0 years ago by
raf4
▴ 20
0
votes
1
reply
1.0k
views
Normalization and batch effect adjustment of fluidgm pcr data to be analyzed with Limma
fluidigm
normalization
limma
pcr
updated 7.3 years ago by
Gordon Smyth
50k • written 7.3 years ago by
raf4
▴ 20
0
votes
0
replies
1.1k
views
Error message in Rsubread detectionCall command
Rsubread
8.2 years ago
raf4
▴ 20
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