## User: ChIP-Tease

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New User
Location:
Germany
Last seen:
1 year, 7 months ago
Joined:
2 years, 11 months ago
Email:
a****************@helmholtz-muenchen.de

#### Posts by ChIP-Tease

<prev • 12 results • page 1 of 2 • next >
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... Hello everybody, Today i found the R Pathview package and could already produce some output pictures. Nevertheless i have some problems and hope that someone might help me out. 1. There is a difference between the original KEGG picture and the modified Pathview picture.    I guess this is not supp ...
written 23 months ago by ChIP-Tease0 • updated 17 months ago by bioinf0
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Comment: C: DESeq2 color coding
... Thanks a lot, that helped a lot! ...
written 2.1 years ago by ChIP-Tease0
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... Hello everybody, i was wondering, if it is possible to change the color coding in the DESeq2 plotMA function? Since i cannot see how the function works, i don't know how to modify anything. Additionally i would like to see how the plotMA works, which points to the same problem: I cannot see any c ...
written 2.1 years ago by ChIP-Tease0 • updated 2.1 years ago by Mike Smith2.7k
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... Hello Jim, Thanks a lot! I accepted it. I didn't know so far that i can accept answers. Also thanks for that hint ...
written 2.8 years ago by ChIP-Tease0
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... Hello everybody, i cannot really make this suggestion work. for file in *gff;do gene=${${file##aa_bb_cc_dd_}%.gff} echo program.sh $file ../../../unchanged_file.txt$gene $file$gene.bed done The problem seems to be this part: gene=${${file##aa_bb_cc_dd_}%.gff} I understand that the \$ ...
written 2.8 years ago by ChIP-Tease0
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...  Thank you! ...
written 2.8 years ago by ChIP-Tease0
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... Thanks a lot, i didn't know that R can call command line programs. This will be very usefull for me. I guess i will try both ways. Thanks a lot again! ...
written 2.8 years ago by ChIP-Tease0
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... Hello everybody,   I have a problem i need some help for. When I run a program on the command line for a single gene, it works fine: program.sh genename_1 ../../../unchanged_file.txt ../../aa_bb_cc_dd_genename_1.gff genename_1.bed   But I need to run it about 1500 times on the command line and ...
written 2.8 years ago by ChIP-Tease0
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... Thanks Jeremy, works perfectly, exactly what i was looking for :D ...
written 3.0 years ago by ChIP-Tease0
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... Hello everybody, maybe someone has an idea how to solve my problem. I have a data frame and it contains all GeneIDs and a value for these genes. Like this: all_genes (around 23000 rows) GeneID Value Gene1 4 Gene2 2 Gene3 9 Gene4 0 ...
written 3.0 years ago by ChIP-Tease0

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