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Comment: Comment: Confounding DE results with DESeq2
2.1 years ago arfranco ▴ 130
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780
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Confounding DE results with DESeq2
isoforms DESeq2
2.1 years ago arfranco ▴ 130
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935
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Comment: C: Installation path not writable
4.2 years ago arfranco ▴ 130
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Answer: A: What will lead DESeq2 shows no DEGs if workflow adopted is okay?
5.1 years ago arfranco ▴ 130
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570
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What do you do with the DESeq2 NA results ?. How do you manage them ?
DESeq2 NA values
updated 6.3 years ago by 41k • written 6.3 years ago by ▴ 130
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1.2k
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Answer: A: Differential expression of RNA seq data at gene level (for Beginner)
6.3 years ago arfranco ▴ 130
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3.4k
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Answer: A: Generate 3' UTR and 5' UTR ranges from a gff file
6.3 years ago arfranco ▴ 130
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Comment: C: limma. After running a differential expression analysis... Can you get the indiv
6.4 years ago arfranco ▴ 130
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1.3k
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Answer: A: limma. After running a differential expression analysis... Can you get the indiv
6.4 years ago arfranco ▴ 130
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4
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1.3k
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limma. After running a differential expression analysis... Can you get the individual gene expression levels between individual contrasts for each of…
limma gene expression differential gene expression
6.4 years ago arfranco ▴ 130
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1.3k
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Answer: A: limma. After running a differential expression analysis... Can you get the indiv
6.4 years ago arfranco ▴ 130
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1.1k
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Comment: C: RNA-seq analysis without replicates using tximport and DESeq2
7.4 years ago arfranco ▴ 130
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2.6k
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Very small bug in DESeq2
software error
7.5 years ago arfranco ▴ 130
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2.6k
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Answer: A: Very small bug in DESeq2
7.5 years ago arfranco ▴ 130
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2.6k
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Comment: C: Very small bug in DESeq2
7.5 years ago arfranco ▴ 130
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2.6k
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Answer: A: Very small bug in DESeq2
7.5 years ago arfranco ▴ 130
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1.6k
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Answer: A: Limma Elist subsetting
7.9 years ago arfranco ▴ 130
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1.6k
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Limma Elist subsetting
microarray limma subsetting
7.9 years ago arfranco ▴ 130
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1.1k
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Answer: A: Methylation and gene expression data
7.9 years ago arfranco ▴ 130
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1.9k
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Comment: C: Error: could not find function "HTSeqCounts"
8.0 years ago arfranco ▴ 130
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1.9k
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Answer: A: Error: could not find function "HTSeqCounts"
8.0 years ago arfranco ▴ 130
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1.9k
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Answer: A: Error: could not find function "HTSeqCounts"
8.0 years ago arfranco ▴ 130
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3.6k
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Answer: A: How to import data to R
8.2 years ago arfranco ▴ 130
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9.8k
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Answer: A: converting integer to numeric
8.3 years ago arfranco ▴ 130
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1.6k
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Answer: A: Package installation errors for Bioconductor and easyRNASeq
8.4 years ago arfranco ▴ 130
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limma Time Course Experiment with many time points
limma RNA-Seq
updated 8.5 years ago by ★ 28k • written 8.5 years ago by ▴ 130
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Answer: A: Problems with clustering a micro array data using R
8.6 years ago arfranco ▴ 130
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3
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18k
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limma p-value and adjusted p-value meaning
limma
8.6 years ago arfranco ▴ 130
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18k
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Answer: A: limma p-value and adjusted p-value meaning
8.6 years ago arfranco ▴ 130
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1.3k
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Comment: C: microarray agilent data
8.8 years ago arfranco ▴ 130
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1.3k
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Answer: A: microarray agilent data
8.8 years ago arfranco ▴ 130
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9.4k
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Answer: A: DESeq2: Starting from count tables
8.8 years ago arfranco ▴ 130
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Answer: A: Normalize between Arrays (Agilent two color)
8.8 years ago arfranco ▴ 130
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Comment: C: reading a *.txt file of expression values into an AffyBatch
8.8 years ago arfranco ▴ 130
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2.6k
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Answer: A: reading a *.txt file of expression values into an AffyBatch
8.8 years ago arfranco ▴ 130
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3.1k
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Comment: C: matrix transposing in R
8.8 years ago arfranco ▴ 130
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3.1k
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Comment: C: matrix transposing in R
8.8 years ago arfranco ▴ 130
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3.1k
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Answer: A: matrix transposing in R
8.8 years ago arfranco ▴ 130
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3.1k
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Answer: A: matrix transposing in R
8.8 years ago arfranco ▴ 130
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Answer: A: Newbie - Adding Labels to Individual Genes with ggbio?
8.8 years ago arfranco ▴ 130
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