User: gabriel.hoffman

Reputation:
80
Status:
Trusted
Location:
United States
Website:
http://gabrielhoffman....
Scholar ID:
Google Scholar Page
Last seen:
1 month, 1 week ago
Joined:
4 years, 4 months ago
Email:
g**************@mssm.edu

I develop and apply statistical methods in genomics (mostly RNA-Seq) to understand the biology of human disease.

Posts by gabriel.hoffman

<prev • 14 results • page 2 of 2 • next >
1
vote
1
answer
251
views
1
answer
Bug report for GenomicRanges
... GenomicRanges prints a large set of warnings to my terminal when I set a class variable first: library(GenomicRanges) setClass("DataFrame") gr = GRanges(rep(1, 2), IRanges(1:2, 1:2)) This results in this message printed to the terminal: Found more than one class "DataFrame" in cache; using th ...
genomicranges written 12 months ago by gabriel.hoffman80 • updated 12 months ago by Michael Lawrence11k
0
votes
1
answer
253
views
1
answer
Gene set enrichment analysis with ChIP-seq data using test statistics directly
... In RNA-seq/microarray data, enrichment analysis of gene sets generally takes 2 forms:  1) Identify a set of genes that are significant by some metric (usually FDR < 5%) and evaluate enrichment compared to some background set of genes; 2) use the test statistics directly to avoid an arbitrary cuto ...
limma csaw written 14 months ago by gabriel.hoffman80 • updated 14 months ago by Aaron Lun25k
0
votes
3
answers
633
views
3
answers
Answer: A: Making package compatible with old version of R/Bioconductor
... I really appreciate your feedback.  I agree with you, I just wanted to see if I was missing anything Thanks, - Gabriel  ...
written 3.4 years ago by gabriel.hoffman80
1
vote
3
answers
633
views
3
answers
Making package compatible with old version of R/Bioconductor
... I wrote the Bioconductor package variancePartition (http://bioconductor.org/packages/variancePartition/) which is currently available for Bioconductor >=v3.2 and corresponds to R >=v3.2.  I submitted a manuscript based on this software to a peer-reviewed journal, but a reviewer only has R v3.1 ...
biocinstaller software error R bioconductor written 3.4 years ago by gabriel.hoffman80

Latest awards to gabriel.hoffman

Scholar 11 months ago, created an answer that has been accepted. For A: Blocking factor in limma/voom vs. variancePartition/dream analysis.
Autobiographer 3.4 years ago, has more than 80 characters in the information field of the user's profile.

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 16.09
Traffic: 202 users visited in the last hour