User: yueli7

gravatar for yueli7
yueli70
Reputation:
0
Status:
New User
Last seen:
10 months, 4 weeks ago
Joined:
3 years, 10 months ago
Email:
y*****@126.com

Profile information, website and location are not shown for new users.

This helps us discourage the inappropriate use of our site.

Posts by yueli7

<prev • 22 results • page 2 of 3 • next >
0
votes
1
answer
660
views
1
answers
Comment: C: Error in DESeqDataSet(se, design = design, ignoreRank) : all variables in des
... Thanks, > colData              group_list treated1fb      treated treated2fb      treated treated3fb      treated untreated1fb  untreated untreated2fb  untreated > dds <- DESeqDataSetFromMatrix(countData = exprSet, colData = colData, design = ~ group_list)   ...
written 12 months ago by yueli70
1
vote
1
answer
660
views
1
answer
Error in DESeqDataSet(se, design = design, ignoreRank) : all variables in design formula must be columns in colData
... Hello, How can I figure out this? Thanks in advance! > head(huang_group_list)                   x 1    549_repair.bam 2      6_repair.bam 3  6plus_repair.bam 4     14_repair.bam 5 14plus_repair.bam   > colData                                    x X549_repair.bam       549_repair.bam X6_re ...
deseq2 written 12 months ago by yueli70
0
votes
1
answer
264
views
1
answers
Comment: C: trouble in install DESeq2
... Thank you so much!   I have fixed it. make install   administrator@ACB-HuangLab-Ubuntu:~$ R R version 3.5.0 (2018-04-23) -- "Joy in Playing" Copyright (C) 2018 The R Foundation for Statistical Computing Platform: x86_64-pc-linux-gnu (64-bit)   ...
written 12 months ago by yueli70
0
votes
1
answer
264
views
1
answers
Comment: C: trouble in install DESeq2
... Thank you again! I tried another way.   administrator@ACB-HuangLab-Ubuntu:~$ cd R-3.5.0/bin administrator@ACB-HuangLab-Ubuntu:~/R-3.5.0/bin$ R R version 3.2.5 (2016-04-14) -- "Very, Very Secure Dishes" Copyright (C) 2016 The R Foundation for Statistical Computing Platform: x86_64-pc-linux-gnu (6 ...
written 12 months ago by yueli70
0
votes
1
answer
264
views
1
answers
Comment: C: trouble in install DESeq2
... Thank you so much!   I try to use R-3.5.0, but it is still old version. What can I do!   Thank you in advance!     administrator@ACB-HuangLab-Ubuntu:~$ cd R-3.5.0/ administrator@ACB-HuangLab-Ubuntu:~/R-3.5.0$ R R version 3.2.5 (2016-04-14) -- "Very, Very Secure Dishes" Copyright (C) 2016 Th ...
written 12 months ago by yueli70
0
votes
1
answer
264
views
1
answers
Comment: A: trouble in install DESeq2
... So sorry about that: I write in the wrong place.     Thank you so much!   I try to use R-3.5.0, but it is still old version. What can I do!   Thank you in advance!   administrator@ACB-HuangLab-Ubuntu:~$ cd R-3.5.0/ administrator@ACB-HuangLab-Ubuntu:~/R-3.5.0$ R R version 3.2.5 (2016-04-14 ...
written 12 months ago by yueli70
2
votes
1
answer
264
views
1
answer
trouble in install DESeq2
... Hello,   I have trouble in install the package DESeq2.   Thank you in advance!    /home/administrator/R/x86_64-pc-linux-gnu-library/3.2/mgcv/libs ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help gcc -std=gnu99 -I/usr/local/lib/R/include -DNDEBUG  -I/usr/local/ ...
deseq2 package installation written 12 months ago by yueli70
0
votes
2
answers
4.0k
views
2
answers
Answer: A: install RCurl in R
... Thanks everyone,   Your answers have given me great help!   ...
written 3.8 years ago by yueli70
0
votes
2
answers
706
views
2
answers
Answer: A: DESeq pvalue>0.05 qvalue=1
... Thanks, I will try DESeq2.   Thanj you for your help! ...
written 3.8 years ago by yueli70
0
votes
2
answers
706
views
2
answers
DESeq pvalue>0.05 qvalue=1
... Hi, I try to DESeq find the differentially expressed genes in two samples. The result is all the pvalue>0.05, and qvalue=1. Any suggestion or advice? Thanks for great help! Yue ...
deseq pvalue qvalue written 3.9 years ago by yueli70

Latest awards to yueli7

Popular Question 3.8 years ago, created a question with more than 1,000 views. For install RCurl in R

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 16.09
Traffic: 270 users visited in the last hour