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Comment: C: ComBat: Adjustment for 3experimental variables
7.8 years ago chris86 ▴ 420
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0
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1.3k
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Comment: C: analysing continuous variable with limma and correcting for covariates
7.8 years ago chris86 ▴ 420
2
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2
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1.3k
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analysing continuous variable with limma and correcting for covariates
limma microarray
updated 7.8 years ago by 65k • written 7.8 years ago by ▴ 420
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0
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1.3k
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Answer: A: Appropriate input of merged datasets regarding batch effect correction with ComB
7.8 years ago chris86 ▴ 420
0
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1
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1.8k
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Comment: C: ComBat: Adjustment for 3experimental variables
7.8 years ago chris86 ▴ 420
2
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1
reply
546
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illuminaHumanv4.db versus illuminaHumanv2.db beadchip annotation differences
limma microarray
updated 7.8 years ago by 65k • written 7.8 years ago by ▴ 420
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0
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969
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Answer: A: Normalizing RNA-Seq data without replicates.
7.8 years ago chris86 ▴ 420
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1
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3.9k
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Comment: C: Differential expression analysis of already normalized sequence counts
7.9 years ago chris86 ▴ 420
4
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1
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611
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How to fit a regression for a time series array experiment with limma?
limma microarray
updated 7.9 years ago by 65k • written 7.9 years ago by ▴ 420
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0
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908
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Comment: C: design matrix for dge
7.9 years ago chris86 ▴ 420
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0
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648
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Comment: C: Best approach to analyse this time series experiment
7.9 years ago chris86 ▴ 420
1
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2
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648
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Best approach to analyse this time series experiment
microarray
updated 7.9 years ago by 50k • written 7.9 years ago by ▴ 420
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0
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1.9k
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Comment: C: Can I calculate counts from the base mean and log2fc outputs of DESeq2? Also, c
7.9 years ago chris86 ▴ 420
2
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1
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841
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Meta analysis of healthy and diseased data using illumina microarrays
normalization
updated 7.9 years ago by ▴ 150 • written 7.9 years ago by ▴ 420
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2
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980
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Why are these two clustering patterns different?
bioconductor
updated 7.9 years ago by ▴ 510 • written 7.9 years ago by ▴ 420
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1
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2.4k
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Comment: C: Apply the plotPCA function in DESeq2 package to quantitative MS-based data
7.9 years ago chris86 ▴ 420
1
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1
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2.4k
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Answer: A: Apply the plotPCA function in DESeq2 package to quantitative MS-based data
7.9 years ago chris86 ▴ 420
0
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0
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2.5k
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Comment: C: Annotation in ExpressionSet object
7.9 years ago chris86 ▴ 420
0
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1
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2.5k
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Answer: A: Annotation in ExpressionSet object
7.9 years ago chris86 ▴ 420
0
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1
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1.7k
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Comment: C: Combining data from multiple illumina microarray experiments
7.9 years ago chris86 ▴ 420
0
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0
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1.7k
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Comment: C: Combining data from multiple illumina microarray experiments
7.9 years ago chris86 ▴ 420
3
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10
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1.7k
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Combining data from multiple illumina microarray experiments
normalization limma
updated 7.9 years ago by 50k • written 7.9 years ago by ▴ 420
0
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0
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1.7k
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Comment: C: Combining data from multiple illumina microarray experiments
7.9 years ago chris86 ▴ 420
0
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1
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1.7k
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Comment: C: Combining data from multiple illumina microarray experiments
7.9 years ago chris86 ▴ 420
0
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1
reply
1.7k
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Comment: C: Combining data from multiple illumina microarray experiments
7.9 years ago chris86 ▴ 420
0
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1
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2.1k
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Comment: C: microarray data analsis with limma?
7.9 years ago chris86 ▴ 420
0
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0
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2.5k
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Comment: C: Is this the correct way of doing a paired t-test in limma using contrasts
7.9 years ago chris86 ▴ 420
0
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1
reply
875
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Comment: C: design matrix for a 2 groups
7.9 years ago chris86 ▴ 420
1
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1
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875
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Answer: A: design matrix for a 2 groups
7.9 years ago chris86 ▴ 420
0
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0
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977
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Comment: C: What are the expression value of genes/probes in limma results of topTable
7.9 years ago chris86 ▴ 420
0
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1
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2.5k
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Answer: A: Is this the correct way of doing a paired t-test in limma using contrasts
7.9 years ago chris86 ▴ 420
5
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5
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2.5k
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Is this the correct way of doing a paired t-test in limma using contrasts
limma
7.9 years ago chris86 ▴ 420
2
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1
reply
890
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Answer: A: How to calculate design matrix and conduct moderate t test to find DEGs
8.0 years ago chris86 ▴ 420
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0
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1.7k
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Answer: A: lumi package impossible to install - xtable library
8.0 years ago chris86 ▴ 420
1
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0
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1.7k
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Comment: C: Understanding the output of the exprs() function
8.0 years ago chris86 ▴ 420
0
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1
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1.7k
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Comment: C: Understanding the output of the exprs() function
8.0 years ago chris86 ▴ 420
1
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0
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1.4k
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Comment: C: comBat/SVA with no "variable of interest" and two batches
8.0 years ago chris86 ▴ 420
0
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0
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763
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Comment: C: How to do contrasts in CAMERA/ROMER/ROAST/etc in Limma?
8.0 years ago chris86 ▴ 420
3
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2
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763
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How to do contrasts in CAMERA/ROMER/ROAST/etc in Limma?
limma
updated 8.0 years ago by ★ 28k • written 8.0 years ago by ▴ 420
1
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1
reply
1.4k
views
Answer: A: comBat/SVA with no "variable of interest" and two batches
8.0 years ago chris86 ▴ 420
0
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1
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1.2k
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Answer: A: How to compute Gene Regulatory Network on microarraay data
8.0 years ago chris86 ▴ 420
0
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0
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925
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Answer: A: How to compute Microarray gene interaction
8.0 years ago chris86 ▴ 420
1
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1
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4.9k
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Comment: C: Heatmap of a subset of genes
8.0 years ago chris86 ▴ 420
0
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1
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4.9k
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Comment: C: Heatmap of a subset of genes
8.0 years ago chris86 ▴ 420
1
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1
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4.9k
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Answer: A: Heatmap of a subset of genes
8.0 years ago chris86 ▴ 420
0
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0
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2.4k
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Comment: C: Complexheatmap question on sorting columns
8.0 years ago chris86 ▴ 420
0
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0
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728
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Comment: C: Using p.nominal DE genes from limma
8.0 years ago chris86 ▴ 420
0
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0
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728
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Comment: C: Using p.nominal DE genes from limma
8.0 years ago chris86 ▴ 420
5
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5
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728
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Using p.nominal DE genes from limma
limma
updated 8.0 years ago by ▴ 360 • written 8.0 years ago by ▴ 420
2
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1
reply
1.5k
views
Answer: A: Co-expression between host and pathogen genes
8.1 years ago chris86 ▴ 420
179 results • Page 3 of 4
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