User: anusha.nagari

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UT SOUTHWESTERN MEDICAL CENTER
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Posts by anusha.nagari

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Comment: C: error with detectTranscripts
... Hello! Removing the random chr annotations (chrUn_gl0000230, chr9_gl000198_random) from your bam file should take of that error with the current version of groHMM package. Please try:  Sall_stdchr <- keepStandardChromosomes(Sall) hmmResult <- detectTranscripts(Sall_stdchr, LtProbB=-200, UTS= ...
written 9 days ago by anusha.nagari0
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Help with R CMD check NOTEs
... Hello,   I am getting the following NOTES at R CMD check step:   NOTE1: * checking package dependencies ... NOTE Depends: includes the non-default packages:   ‘MASS’ ‘parallel’ ‘S4Vectors’ ‘IRanges’ ‘GenomeInfoDb’   ‘GenomicRanges’ ‘GenomicAlignments’ ‘rtracklayer’ Adding so many packages to the sea ...
r cmd check written 9 months ago by anusha.nagari0 • updated 9 months ago by Martin Morgan ♦♦ 22k
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Comment: C: Error in normalizeDoubleBracketSubscript()
... Thanks for the reply. Here is the code: require(groHMM) library(IRanges) library(GenomicRanges) windowAnalysis <- function(reads, strand="*", windowSize=stepSize, stepSize=windowSize, chrom=NULL, limitPCRDups=FALSE,mc.cores=1, ...) { if (!(windowSize > 0 & (windowSize <= max( ...
written 2.8 years ago by anusha.nagari0

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