User: treleo

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treleo0
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Posts by treleo

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Comment: C: Limma time series spline help
... I made one with my new username tleona3 and the title is: Question: LIMMA time series spline model.matrix design setup ...
written 4 months ago by treleo0
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Comment: C: Limma time series spline help
... I am working on an experimental design very similar to the one you have posted above Aaron, and I had a few questions regarding your response. Could you explicitly write out how each of your suggestions would look using the model.matrix above? For example, I'm trying to do three things with my datas ...
written 4 months ago by treleo0
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Comment: C: Multifactor Design Issue using DESeq2
... I completely agree with you on the experimental design. Unfortunately this data-set was generated before I entered my lab so I was just trying to make the most out of it. Thanks for your response. ...
written 3.9 years ago by treleo0
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Multifactor Design Issue using DESeq2
... Hi All, I am attempting to create a MF design that will allow me to analyze paired samples (mouse) when testing different conditions, i.e. contrast(c("condition", "E", "D")) . When I attempt to create the dds file I receive this error whether or not I include or exclude the first two samples (B10 a ...
deseq2 multiple factor design written 3.9 years ago by treleo0 • updated 3.9 years ago by James W. MacDonald50k

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