User: helen.lindsay

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Posts by helen.lindsay

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Answer: A: Unable to define a CrisprSet because of missing target location
... This is a bug that occurs when all of the reads are mapped as chimeras, sorry!  It's now fixed in devel version 1.3.4. Best wishes, Helen ...
written 2.7 years ago by helen.lindsay0
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Answer: A: loading .bam file in CrispRVarients
... Hi Matthew, This command in the User Guide uses the program samtools faidx to fetch the guide sequence from the reference genome.  The reference genome should be in .fasta format.  In your command above, you are using a .bam file of mapped reads rather than the reference genome.  The command is als ...
written 2.9 years ago by helen.lindsay0
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"duplicated" on LogicalList with fromLast = TRUE gives error
... Hi, I’m getting an error when running “duplicated” with “fromLast = TRUE” on a LogicalList object using Bioconductor devel. Here’s an example: >x <- LogicalList(list(c(TRUE, FALSE), c(FALSE, TRUE, TRUE))) >duplicated(x, fromLast = TRUE) Error in rev(ans) : object 'ans' not found > ...
iranges written 3.3 years ago by helen.lindsay0 • updated 3.3 years ago by Michael Lawrence11k

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