User: sezimmer

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sezimmer0
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Posts by sezimmer

<prev • 5 results • page 1 of 1 • next >
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Comment: C: differential expression analysis in edgeR when you have 2 experiments and batch
... You are right. I realized I made a mistake in the experiment variable. Instead of  experiment <- factor(c(0,0,rep("1",16))) it should be.  experiment <- factor(c(0,0,0,0,0,0,rep("1",12))) This is because my first experiment is for the first 6 samples, and the second experiment is for the ...
written 13 months ago by sezimmer0
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Comment: C: differential expression analysis in edgeR when you have 2 experiments and batch
... Thanks Aaron for the help. I updated the question above to fix the mix up in labeling the design matrix as well. Unfortunately though, that design matrix did not work. When I used it in the estimateDisp function of edgeR I got an error saying the Design matrix was not of full rank. Do you know why t ...
written 13 months ago by sezimmer0
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differential expression analysis in edgeR when you have 2 experiments and batch effect in 1 of the 2 experiments.
... Dear Bioconductor Community, I am trying to do a differential expression analysis between different cell types, where I have four different cell types from two different experiments. Two of the cell types come from one experiment and four cell types come from the other. I have a total of 18 samples ...
edger differential expression batch effect written 13 months ago by sezimmer0
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Comment: C: Forgot password to update Bioconductor package
... Thank you very much! ...
written 2.1 years ago by sezimmer0
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Forgot password to update Bioconductor package
... Hi All, Several years ago, my PI maintained a Biocunductor package, but has since forgotten the username and password she was given to make updates to the package. We have now made many changes and want to update our package through SVN, but do not remember the password and username. Is there any w ...
bioconductor svn written 2.1 years ago by sezimmer0

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