User: February

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February0
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Posts by February

<prev • 4 results • page 1 of 1 • next >
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Answer: A: question about DiffBind
... hi My command line as follows: >diff <- dba(sampleSheet="sample.csv") > head(diff$vectors)     CHR     START       END       A_K2       B_H3 1     1  24611508  24613285 0.66803548 0.51411935 2     1 172350354 172351110 0.02988387 0.02449355 3     1 183299111 183299590 0.11737097 0.2310032 ...
written 2.2 years ago by February0
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Answer: A: question about DiffBind
... hi Rory Thank you for your advice and details. It really helped me a lot. And here I havd another question about dba.count().In DiffBind reference manual,you had saied "DiffBind can use the supplied sequence read files to count how many reads overlap each interval for each unique sample. The resul ...
written 2.2 years ago by February0
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question about DiffBind
... hi  Rory, I'm a new with DiffBind for di fferential binding analysis of ChIP-Seq peak data.I want to write command line for my work.But always print error.I really don't understant with dba.contrast and dba.mask.   I have 4 samples with chip-experiment,they are A_K2、B_T1、B_T3 and B_H3.And I have g ...
diffbind differential binding analysis written 2.2 years ago by February0 • updated 2.2 years ago by Rory Stark2.1k
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Comment: C: DiffBind installation doesn't work
... hi Gord I am a new and my DiffBind installation also doesn't work.The problem is as follows: > library("DiffBind") Loading required package: GenomicAlignments Loading required package: Biostrings Error in unloadNamespace(package) :    namespace ?.iostrings?.is imported by ?.enomicAlignments?. ? ...
written 2.3 years ago by February0

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Popular Question 22 months ago, created a question with more than 1,000 views. For question about DiffBind

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