User: February

February • 0

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Posts by February

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Answer: A: question about DiffBind

... hi My command line as follows: >diff <- dba(sampleSheet="sample.csv") > head(diff$vectors) CHR START END A_K2 B_H3 1 1 24611508 24613285 0.66803548 0.51411935 2 1 172350354 172351110 0.02988387 0.02449355 3 1 183299111 183299590 0.11737097 0.2310032 ...

written 3.0 years ago by February • 0

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Answer: A: question about DiffBind

... hi Rory Thank you for your advice and details. It really helped me a lot. And here I havd another question about dba.count().In DiffBind reference manual,you had saied "DiffBind can use the supplied sequence read files to count how many reads overlap each interval for each unique sample. The resul ...

written 3.1 years ago by February • 0

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question about DiffBind

... hi Rory, I'm a new with DiffBind for differential binding analysis of ChIP-Seq peak data.I want to write command line for my work.But always print error.I really don't understant with dba.contrast and dba.mask. I have 4 samples with chip-experiment,they are A_K2、B_T1、B_T3 and B_H3.And I have g ...

diffbind differential binding analysis written 3.1 years ago by February • 0 • updated 3.0 years ago by Rory Stark • 2.5k

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Comment: C: DiffBind installation doesn't work

... hi Gord I am a new and my DiffBind installation also doesn't work.The problem is as follows: > library("DiffBind") Loading required package: GenomicAlignments Loading required package: Biostrings Error in unloadNamespace(package) : namespace ?.iostrings?.is imported by ?.enomicAlignments?. ? ...

written 3.1 years ago by February • 0

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Popular Question 2.6 years ago, created a question with more than 1,000 views. For question about DiffBind