Admin: nitesh.turaga

gravatar for nitesh.turaga
nitesh.turaga130
Reputation:
130
Status:
Trusted
Location:
United States
Last seen:
1 day, 6 hours ago
Joined:
3 years, 3 months ago
Email:
n************@gmail.com

Posts by nitesh.turaga

<prev • 19 results • page 1 of 2 • next >
0
votes
1
answers
102
views
1
answers
Answer: A: DEXSeqHTML getListElement GRanges error
... Hi Lance, I guess you can install bioconductor-dexseq==1.24.0 on a new conda environment, and copy the script being run from the tool, and use it within that conda environment? AS you mentioned the script being run is /galaxy/shed_tools/toolshed.g2.bx.psu.edu/repos/iuc/dexseq/f89c9b25feb4/dexseq/ ...
written 21 days ago by nitesh.turaga130
0
votes
1
answers
111
views
1
answers
Comment: C: Can't push upstream - duplicate commits
... Hi Sam, I took a look at bumphunter. There are a couple of things I wanted to say. First, it seems like this commit was the one creating all the duplicate commits for the package. 718d3d8 Merge with Bioconductor devel brach $$ git show 718d3d8 commit 718d3d87af114f8dc404c3889c673fac861bb84c ...
written 6 weeks ago by nitesh.turaga130
0
votes
1
answers
146
views
1
answers
Comment: C: BioParallel::BatchtoolsParam() - how to pass customized resource variables to ba
... The argument you need is `template` param <- BatchtoolsParam(workers=5, cluster="sge", template=template) The template can hold your ncpus information.  There is also an option called `registryargs` where you can pass in the resources you want.  Please check the vignette, https://bioconducto ...
written 7 weeks ago by nitesh.turaga130
0
votes
0
answers
125
views
0
answers
Comment: C: pintersect using GRangeslist
... Please submit your sessionInfo() and also check BiocManager::biocValid(). Paste outputs of both. ...
written 5 months ago by nitesh.turaga130
0
votes
1
answers
184
views
1
answers
Comment: C: Non-Redundant Edges in Connected Components
... Hi Dario, Maybe you can explain the problem to me a little more. I'm trying to follow the example in the connectedComp help page. This is the graph the example mentions ` con <- file(system.file("GXL/kmstEx.gxl",package="graph"), open="r") km <- fromGXL(con) close(con) km ...
written 6 months ago by nitesh.turaga130
0
votes
1
answers
216
views
1
answers
Answer: A: rss feed for new packages
... Hi,; You can see the list of accepted packages in Bioconductor at this link We will try and update that rss file soon and will inform the community once it is active again. Best, Nitesh; ...
written 10 months ago by nitesh.turaga130
0
votes
1
answers
225
views
1
answers
Answer: A: flowCL - svn conversion to Github
... Hi Justin, The Bioconductor-mirror has been deprecated and removed. See this post to follow -- https://stat.ethz.ch/pipermail/bioc-devel/2017-August/011329.html  Please submit your key to https://docs.google.com/forms/d/1CCwUhjtG82rnmcTWYqY43WcmBx5YyQm5UD4pcs1dhEs/edit. As pointed out in the FAQ s ...
written 11 months ago by nitesh.turaga130
0
votes
1
answers
279
views
1
answers
Answer: A: GIT: Fetch package source from remote upstream
... Hi Henry, The package oposSOM is affiliated to a person called Martin Kalcher in our system. He's the only one who has access at the moment as historically, only his key was added along with the package. To further follow up on this issue, please email maintainer@bioconductor.org or bioc-devel < ...
written 11 months ago by nitesh.turaga130
0
votes
1
answers
608
views
1
answers
Answer: A: Package update issue under OSX Sierra
... Hi, Did you install XCode?  Also take a look at http://r.research.att.com/libs/ for any packages you need as extras.  ...
written 13 months ago by nitesh.turaga130
0
votes
1
answers
516
views
1
answers
Answer: A: Remote rejected after resetting to previous commit
... Hi, You cannot force push to the git.bioconductor.org repository. This is not allowed. You need to follow , http://bioconductor.org/developers/how-to/git/sync-existing-repositories/ and pay close attention to point#8 http://bioconductor.org/developers/how-to/git/abandon-changes/#force-bioconductor- ...
written 13 months ago by nitesh.turaga130

Latest awards to nitesh.turaga

Appreciated 21 months ago, created a post with more than 5 votes. For Bioconductor git server is now LIVE!
Popular Question 21 months ago, created a question with more than 1,000 views. For Bioconductor git transition BETA phase starts now.
Popular Question 21 months ago, created a question with more than 1,000 views. For Bioconductor git server is now LIVE!
Scholar 21 months ago, created an answer that has been accepted. For A: Access to github repository- how does one know if their ssh public key was accep
Scholar 21 months ago, created an answer that has been accepted. For A: Remote rejected after resetting to previous commit

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.2.0
Traffic: 292 users visited in the last hour