User: luong.jeff

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Posts by luong.jeff

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Comment: C: predictCoding with multiple samples
... Hi Valerie, I’m still having difficulties interpreting my GT data using the genotypeToSnpMatrix function. I have some sample data below to illustrate my situation. The predictCoding function output suggests that there are 4 coding variants at row 4116 of the original query. But the SnpMatrix data s ...
written 4.3 years ago by luong.jeff0
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predictCoding with multiple samples
... Hi BioC, I'm using the predictCoding function in the VariantAnnotation package on a VCF file with multiple samples. predictCoding tells me that there are many variations at the same location, but no way to tell which variation occurred in which sample. It is possible to retrieve this information? ...
variantannotation predict coding written 4.3 years ago by luong.jeff0 • updated 4.3 years ago by Valerie Obenchain6.7k

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