User: MARIA STALTERI

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Posts by MARIA STALTERI

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Comment: C: metadata - annotation package changes
... OK, but what release of the Affymetrix csv files was used for the previous annotation packages, and which field of the csv files did the accession numbers come from? Thanks for trying to answer my question. Maria. On Tue, 9 Aug 2005, John Zhang wrote: > Date: Tue, 9 Aug 2005 09:45:42 -0400 ( ...
written 14.3 years ago by MARIA STALTERI160
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Comment: C: metadata - annotation package changes
... Hi John, If you were involved with building the previous releases you can probably tell me where the accession numbers for the previous releases (1.5,1.6,1.7) came from. Do you actually get them from the Affymetrix annotation files, and if so, which section? For some probe sets different sections of ...
written 14.3 years ago by MARIA STALTERI160
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metadata - annotation package changes
... Hi, I guess my question is mainly directed to John Zhang and the other authors/maintainers of the annotation packages for Affymetrix chips. In the latest versions (1.8) of the moe430a and rae230a packages, the probe set ID-to-accession number mappings (ACCNUM) are different from those given in prev ...
annotation moe430a probe written 14.3 years ago by MARIA STALTERI160 • updated 14.3 years ago by John Zhang2.9k
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Answer: A: error with results.summary in simpleaffy
... Hi, The missing hgu133a probe sets >[1] "AFFX-r2-Hs18SrRNA-3_s_at" "AFFX-r2-Hs18SrRNA-5_at" > [3] "AFFX-r2-Hs18SrRNA-M_x_at" "AFFX-r2-Hs28SrRNA-3_at" > [5] "AFFX-r2-Hs28SrRNA-5_at" "AFFX-r2-Hs28SrRNA-M_at" are all control probe sets, since the probe set IDs start with AFFX. In this cas ...
written 14.4 years ago by MARIA STALTERI160
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annotation packages and ACCNUM mappings
... Hi, I have been using the moe430a and rae230a annotation packages, and have just noticed that in the current release(moe430a version 1.8.5 and rae230a version 1.8.4) the ACCNUM mappings correspond to the GenBank accession numbers from the 'Representative Public Identifier' field of the Affymetrix cs ...
annotation moe430a rae230a written 14.4 years ago by MARIA STALTERI160 • updated 14.4 years ago by Ting-Yuan Liu FHCRC780
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bug in moe430a annotation packages
... Hi, I've been using the moe430a and rae230a annotation packages, and I notice that with the moe430a package I get 540 probe sets that map to the gene symbol A1BG, and also 540 probe sets that map to the Locusid 1. On searching the mail archive I noticed that this bug was reported nearly a year ago ...
annotation moe430a rae230a probe written 15.3 years ago by MARIA STALTERI160 • updated 15.3 years ago by John Zhang2.9k

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